The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR27
  5. cit-miR27bq

Accession: B16602151

Entry

ID: cit-miR27bq
Alias: F15151.L000077.A11
Sequence: UUCACAGUGGCUAAGUUCCGG
Description: microRNA mir-27 predicted
Species: 菊苣  Species latin name: Cichorium intybus
TCM Name: Juju(菊苣)  
TCM Resource (Sample number): 菊苣(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR27o; cit-miR27bq; hcr-miR27au; poe-miR27ax; sor-miR27bo;

Rfam Alignments

>> mir-27  microRNA mir-27
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0015   20.3   0.0  cm       56       75 ~.           1          20 + ~. 1.00    5' 0.50
                               ?????  ???????????   NC
                         ~~~~~~>>>>>-->>>>>>>>>>>:: CS
               mir-27 15 <[41]*uUCACAGuGGCUAAGuuCuG 75
                               UUCACAGUGGCUAAGUUC+G
          sor-miR27bo  1 <[ 0]*UUCACAGUGGCUAAGUUCCG 20
                         ......******************** PP

Targets

Predicted by TargetFinder

NM_004466 ;  

Predicted by TAPIR

NM_001304514 ;   NM_001371458 ;   NM_001371459 ;   NM_001371460 ;   NM_001371461 ;   NM_001371462 ;   NM_001371463 ;   NM_001371464 ;   NM_001371465 ;   NM_001371466 ;   NM_001371467 ;   NM_001371468 ;   NM_001371469 ;   NM_001371470 ;   NM_001371475 ;   NM_004466 ;   NM_007364 ;   NM_021916 ;   NM_022087 ;   NM_145292 ;   NR_028597 ;   NR_033169 ;   NR_125394 ;   NR_163956 ;   NR_163957 ;   NR_163959 ;