The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR27
  5. cit-miR27bm

Accession: B16602143

Entry

ID: cit-miR27bm
Alias: F15151.K000049.A11
Sequence: UUCACAGUGGCUAAGUUCUU
Description: microRNA mir-27 predicted
Species: 菊苣  Species latin name: Cichorium intybus
TCM Name: Juju(菊苣)  
TCM Resource (Sample number): 菊苣(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR27l; cit-miR27bm; cmd-miR27as; llu-miR27f; sor-miR27bk;

Rfam Alignments

>> mir-27  microRNA mir-27
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0037   18.8   0.0  cm       56       74 ~.           1          19 + ~. 1.00    5' 0.42
                               ?????  ???????????  NC
                         ~~~~~~>>>>>-->>>>>>>>>>>: CS
               mir-27 15 <[41]*uUCACAGuGGCUAAGuuCu 74
                               UUCACAGUGGCUAAGUUCU
          sor-miR27bk  1 <[ 0]*UUCACAGUGGCUAAGUUCU 19
                         ......******************* PP

Targets

Predicted by TargetFinder

NM_000213 ;   NM_001004360 ;   NM_001005619 ;   NM_001005731 ;   NM_001010870 ;   NM_001017440 ;   NM_001131019 ;   NM_001142614 ;   NM_001142615 ;   NM_001142616 ;   NM_001161630 ;   NM_001168359 ;   NM_001178036 ;   NM_001178037 ;   NM_001204416 ;   NM_001204419 ;   NM_001204420 ;   NM_001204423 ;   NM_001204424 ;   NM_001242376 ;   NM_001321123 ;   NM_001321783 ;   NM_001321784 ;   NM_001321905 ;   NM_001321906 ;   NM_001321907 ;   NM_001321908 ;   NM_001321909 ;   NM_001321910 ;   NM_001321911 ;   NM_001321912 ;   NM_001321913 ;   NM_001321914 ;   NM_001322251 ;   NM_001324423 ;   NM_001354212 ;   NM_001354213 ;   NM_001354214 ;   NM_001354215 ;   NM_001354216 ;   NM_001354217 ;   NM_001354218 ;   NM_001354219 ;   NM_001354220 ;   NM_001354221 ;   NM_001354222 ;   NM_001363460 ;   NM_001363846 ;   NM_001370270 ;   NM_001370271 ;   NM_001370272 ;   NM_001370273 ;   NM_001370274 ;   NM_001370275 ;   NM_001370276 ;   NM_001370277 ;   NM_001370278 ;   NM_001370279 ;   NM_001370280 ;   NM_001370282 ;   NM_001370283 ;   NM_001370284 ;   NM_001370286 ;   NM_001370287 ;   NM_001370288 ;   NM_001370289 ;   NM_001370290 ;   NM_001370291 ;   NM_001370292 ;   NM_001370293 ;   NM_001370294 ;   NM_002055 ;   NM_003566 ;   NM_004296 ;   NM_004370 ;   NM_004664 ;   NM_012072 ;   NM_015252 ;   NM_017782 ;   NM_020781 ;   NM_020868 ;   NM_021916 ;   NM_031468 ;   NM_080605 ;   NM_080645 ;   NM_080677 ;   NM_138283 ;   NM_170686 ;   NM_170721 ;   NM_173628 ;   NR_104664 ;   NR_135235 ;   NR_136887 ;   NR_136888 ;  

Predicted by TAPIR

NM_000314 ;   NM_001010870 ;   NM_001012957 ;   NM_001014342 ;   NM_001131019 ;   NM_001134337 ;   NM_001134338 ;   NM_001142614 ;   NM_001142615 ;   NM_001142616 ;   NM_001161630 ;   NM_001164537 ;   NM_001164540 ;   NM_001168359 ;   NM_001204416 ;   NM_001204419 ;   NM_001204420 ;   NM_001204423 ;   NM_001204424 ;   NM_001242376 ;   NM_001243733 ;   NM_001256850 ;   NM_001267550 ;   NM_001271938 ;   NM_001278631 ;   NM_001278651 ;   NM_001289112 ;   NM_001304717 ;   NM_001304718 ;   NM_001317930 ;   NM_001321042 ;   NM_001321749 ;   NM_001321783 ;   NM_001321784 ;   NM_001324423 ;   NM_001328637 ;   NM_001354212 ;   NM_001354213 ;   NM_001354214 ;   NM_001354215 ;   NM_001354216 ;   NM_001354217 ;   NM_001354218 ;   NM_001354219 ;   NM_001354220 ;   NM_001354221 ;   NM_001354222 ;   NM_001363557 ;   NM_001363846 ;   NM_001365951 ;   NM_001365952 ;   NM_001370270 ;   NM_001370271 ;   NM_001370272 ;   NM_001370273 ;   NM_001370274 ;   NM_001370275 ;   NM_001370276 ;   NM_001370277 ;   NM_001370278 ;   NM_001370279 ;   NM_001370280 ;   NM_001370282 ;   NM_001370283 ;   NM_001370284 ;   NM_001370286 ;   NM_001370287 ;   NM_001370288 ;   NM_001370289 ;   NM_001370290 ;   NM_001370291 ;   NM_001370292 ;   NM_001370293 ;   NM_001370294 ;   NM_001410 ;   NM_002055 ;   NM_002883 ;   NM_003319 ;   NM_003377 ;   NM_004296 ;   NM_004370 ;   NM_004664 ;   NM_005583 ;   NM_007219 ;   NM_007364 ;   NM_015074 ;   NM_015252 ;   NM_016651 ;   NM_017782 ;   NM_018662 ;   NM_020781 ;   NM_021916 ;   NM_080605 ;   NM_080645 ;   NM_080677 ;   NM_130808 ;   NM_133378 ;   NM_133432 ;   NM_133437 ;   NM_138283 ;   NM_153429 ;   NM_170686 ;   NM_173628 ;   NM_178527 ;   NR_028393 ;   NR_046580 ;   NR_125394 ;   NR_135235 ;   NR_136887 ;   NR_136888 ;   NR_146297 ;