The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. cit-miR1bp

Accession: B16601775

Entry

ID: cit-miR1bp
Alias: F15004.M000009.A11
Sequence: UGGAAUGUAAGGAAGUAUGUAC
Description: mir-1 microRNA precursor family predicted,partially
Species: 菊苣  Species latin name: Cichorium intybus
TCM Name: Juju(菊苣)  
TCM Resource (Sample number): 菊苣(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

acr-miR1p; cit-miR1bp; cmd-miR1bd; cof-miR1o; hcr-miR1ba; poe-miR1bh; sor-miR1bm; tch-miR1az;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0063   20.0   0.0  cm       49       69 ~.           1          21 + ~. 1.00    5' 0.33
                               ??? ????????????????? NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>>> CS
                mir-1  9 <[40]*UGGAAUgUAAaGAAGuAUGua 69
                               UGGAAUGUAA GAAGUAUGUA
           tch-miR1az  1 <[ 0]*UGGAAUGUAAGGAAGUAUGUA 21
                         ......********************* PP

Targets

Predicted by TargetFinder

NM_001040450 ;   NM_001040453 ;   NM_005562 ;   NM_006710 ;  

Predicted by TAPIR

NM_005562 ;   NM_006710 ;