The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. cit-miR1am

Accession: B16475331

Entry

ID: cit-miR1am
Alias: F574.M000086.A11
Sequence: UGGAAUGUAAAGAAGUGUGUAG
Description: mir-1 microRNA precursor family predicted,partially
Species: 菊苣  Species latin name: Cichorium intybus
TCM Name: Juju(菊苣)  
TCM Resource (Sample number): 菊苣(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

cit-miR1am; sor-miR1am; zof-miR1g;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.005   20.3   0.0  cm       49       70 ~~           1          22 + ~~ 1.00 5'&3' 0.36
                               ??? ??????????????????      NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>>>>~~~~~ CS
                mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuag*[7]> 77
                               UGGAAUGUAAAGAAGU UGUAG
            zof-miR1g  1 <[ 0]*UGGAAUGUAAAGAAGUGUGUAG*[0]> 22
                         ......**********************..... PP

Targets

Predicted by TargetFinder

NM_000855 ;   NM_000892 ;   NM_001256424 ;   NM_001318394 ;   NM_001318396 ;   NM_001370529 ;   NM_002037 ;   NM_005562 ;   NM_021637 ;   NM_153047 ;   NM_153048 ;   NM_153700 ;   NR_146078 ;  

Predicted by TAPIR

NM_000892 ;   NM_001166018 ;   NM_001318394 ;   NM_001318396 ;   NM_001370529 ;   NM_001370959 ;   NM_002037 ;   NM_005562 ;   NM_007252 ;   NM_153048 ;   NM_153700 ;   NR_146078 ;