The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR133
  5. cit-miR133ak

Accession: B16512026

Entry

ID: cit-miR133ak
Alias: F1236.M000018.A25*
Sequence: UUGGUCCCCUUCAACCAGCUGG
Description: mir-133 microRNA precursor family predicted,partially
Species: 菊苣  Species latin name: Cichorium intybus
TCM Name: Juju(菊苣)  
TCM Resource (Sample number): 菊苣(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

acr-miR133b; asc-miR133d; cci-miR133c; cfe-miR133e; cit-miR133ak; cmd-miR133ah; cmj-miR133a; csp-miR133b; csu-miR133c; cya-miR133a; fmu-miR133b; hcr-miR133an; ljp-miR133c; nnu-miR133a; poe-miR133ag; sdf-miR133b; sor-miR133am; tan-miR133; tch-miR133af; zof-miR133f;

Rfam Alignments

>> mir-133  mir-133 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00015   22.8   0.0  cm       52       72 ~.           1          21 + ~. 1.00    5' 0.57
                                                             ?????     ?? ???????  NC
                                                       ~~~~~~>>>>>----->>->>>>>>>- CS
                                            mir-133 14 <[38]*uUGGUCCCCUUCAACCAGCuG 72
                                                             UUGGUCCCCUUCAACCAGCUG
                                        zof-miR133f  1 <[ 0]*UUGGUCCCCUUCAACCAGCUG 21
                                                       ......********************* PP

Targets

Predicted by TargetFinder

NM_001005408 ;   NM_001145153 ;   NM_001364885 ;   NM_002830 ;   NM_022744 ;   NM_025081 ;   NM_032442 ;   NM_144649 ;  

Predicted by TAPIR

NM_001005408 ;   NM_001145153 ;   NM_001289395 ;   NM_001364885 ;   NM_002830 ;   NM_003322 ;   NM_005663 ;   NM_022744 ;   NM_024791 ;   NM_025081 ;   NM_032442 ;   NM_144649 ;