The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR164
  5. cit-miR164

Accession: B16646110

Entry

ID: cit-miR164
Alias: F59895.K000029.A25
Sequence: UGGAGAAGCAGGGCACGUGU
Description: microRNA MIR164 predicted
Species: 菊苣  Species latin name: Cichorium intybus
TCM Name: Juju(菊苣)  
TCM Resource (Sample number): 菊苣(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

cit-miR164; csm-miR164a; lfo-miR164f; nte-miR164d; sar-miR164b;

Rfam Alignments

>> MIR164  microRNA MIR164
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0008   19.3   0.0  cm       11       30 ~~           1          20 + ~~ 1.00 5'&3' 0.60
                                                              ????????  ??????????       NC
                                                        ~~~~~~<<<<<<<<--<<<<<<<<<<~~~~~~ CS
                                              MIR164  1 <[10]*UGGaGAAGCAGgGCACgUGc*[79]> 109
                                                              UGGAGAAGCAGGGCACGUG
                                         sar-miR164b  1 <[ 0]*UGGAGAAGCAGGGCACGUGU*[ 0]> 20
                                                        ......********************...... PP

Targets

Predicted by TargetFinder

NM_000168 ;   NM_000195 ;   NM_001008396 ;   NM_001017969 ;   NM_001025200 ;   NM_001033521 ;   NM_001033522 ;   NM_001098536 ;   NM_001128631 ;   NM_001136537 ;   NM_001145453 ;   NM_001184879 ;   NM_001184881 ;   NM_001184882 ;   NM_001190467 ;   NM_001206984 ;   NM_001277198 ;   NM_001277199 ;   NM_001277200 ;   NM_001288654 ;   NM_001288655 ;   NM_001288800 ;   NM_001302705 ;   NM_001307990 ;   NM_001311345 ;   NM_001318503 ;   NM_001321326 ;   NM_001322033 ;   NM_001322476 ;   NM_001322477 ;   NM_001322478 ;   NM_001322479 ;   NM_001322480 ;   NM_001322481 ;   NM_001322482 ;   NM_001322483 ;   NM_001322484 ;   NM_001322485 ;   NM_001322487 ;   NM_001322489 ;   NM_001322490 ;   NM_001322491 ;   NM_001322492 ;   NM_001324 ;   NM_001329190 ;   NM_001329938 ;   NM_001329939 ;   NM_001330742 ;   NM_001348096 ;   NM_001348098 ;   NM_001348099 ;   NM_001370182 ;   NM_001370183 ;   NM_001370184 ;   NM_001370185 ;   NM_001370186 ;   NM_001395 ;   NM_001756 ;   NM_001906 ;   NM_003239 ;   NM_003481 ;   NM_003874 ;   NM_004579 ;   NM_005264 ;   NM_005559 ;   NM_007086 ;   NM_012090 ;   NM_014184 ;   NM_015210 ;   NM_018463 ;   NM_020184 ;   NM_024819 ;   NM_031912 ;   NM_033071 ;   NM_033100 ;   NM_145236 ;   NM_145793 ;   NM_182639 ;   NM_182961 ;   NM_199126 ;   NR_003929 ;   NR_037193 ;   NR_037870 ;   NR_102347 ;   NR_111982 ;   NR_120400 ;   NR_130744 ;   NR_144354 ;   NR_144355 ;   NR_144356 ;   NR_144357 ;   NR_147202 ;  

Predicted by TAPIR

NM_000195 ;   NM_001017969 ;   NM_001025200 ;   NM_001080395 ;   NM_001128631 ;   NM_001172655 ;   NM_001184879 ;   NM_001184881 ;   NM_001184882 ;   NM_001190467 ;   NM_001204897 ;   NM_001204898 ;   NM_001206984 ;   NM_001277198 ;   NM_001277199 ;   NM_001277200 ;   NM_001282396 ;   NM_001282397 ;   NM_001288654 ;   NM_001288655 ;   NM_001289010 ;   NM_001302705 ;   NM_001307990 ;   NM_001311345 ;   NM_001321326 ;   NM_001322033 ;   NM_001322476 ;   NM_001322477 ;   NM_001322478 ;   NM_001322479 ;   NM_001322480 ;   NM_001322481 ;   NM_001322482 ;   NM_001322483 ;   NM_001322484 ;   NM_001322485 ;   NM_001322487 ;   NM_001322489 ;   NM_001322490 ;   NM_001322491 ;   NM_001322492 ;   NM_001329190 ;   NM_001329938 ;   NM_001329939 ;   NM_001330742 ;   NM_001369688 ;   NM_001370182 ;   NM_001370183 ;   NM_001370184 ;   NM_001370185 ;   NM_001370186 ;   NM_001756 ;   NM_001906 ;   NM_003239 ;   NM_003874 ;   NM_004579 ;   NM_004920 ;   NM_005559 ;   NM_006492 ;   NM_012090 ;   NM_014184 ;   NM_016257 ;   NM_018260 ;   NM_018463 ;   NM_020184 ;   NM_020379 ;   NM_024819 ;   NM_031912 ;   NM_032451 ;   NM_033071 ;   NM_138461 ;   NM_173791 ;   NM_182639 ;   NM_182961 ;   NR_003929 ;   NR_037193 ;   NR_037870 ;   NR_037950 ;   NR_102347 ;   NR_111982 ;   NR_130744 ;   NR_134575 ;   NR_144354 ;   NR_144355 ;   NR_144356 ;   NR_144357 ;   NR_147202 ;   NR_161466 ;   NR_163594 ;