The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR166
  5. cde-miR166b

Accession: B15175497

Entry

ID: cde-miR166b
Alias: F37.K000065.A3D*
Sequence: UCGGACCAGGCUUCAUUCCU
Description: MIR166 putative
Species: 肉苁蓉  Species latin name: Cistanche deserticola
TCM Name: Roucongrong(肉苁蓉)  
TCM Resource (Sample number): 肉苁蓉(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

aqc-miR166c; sbi-miR166k;

Bencao Homologs

Bsr-miR166d; Btmz-miR166c; aan-miR166c; aar-miR166c; aha-miR166d; ala-miR166d; amc-miR166a; apa-miR166c; apl-miR166d; att-miR166b; ave-miR166c; bhi-miR166b; cab-miR166b; car-miR166d; cas-miR166c; cau-miR166c; cco-miR166ae; ccs-miR166ae; cde-miR166b; cid-miR166c; cit-miR166d; cja-miR166c; cmn-miR166c; cmo-miR166c; cof-miR166af; dst-miR166e; efo-miR166c; ehu-miR166c; eja-miR166d; epr-miR166ae; esc-miR166a; est-miR166d; fmu-miR166d; fsu-miR166d; fvu-miR166a; gbi-miR166af; gma-miR166d; gmc-miR166d; gpe-miR166c; gsi-miR166d; hcr-miR166ah; hmu-miR166d; hof-miR166d; iba-miR166d; ija-miR166c; ili-miR166c; ini-miR166d; lch-miR166b; lcr-miR166c; lfo-miR166d; lgr-miR166c; ljc-miR166d; lji-miR166c; ljn-miR166c; ljp-miR166d; llc-miR166d; lln-miR166b; llu-miR166d; lpu-miR166ae; mal-miR166d; mca-miR166af; mch-miR166d; nca-miR166d; nja-miR166c; nnu-miR166ad; nsc-miR166c; nte-miR166d; pas-miR166d; pav-miR166d; pcl-miR166e; pcn-miR166d; pfr-miR166ag; poe-miR166d; por-miR166d; ptn-miR166d; pvl-miR166ah; rch-miR166ad; rte-miR166d; sad-miR166c; sba-miR166c; sbc-miR166c; sch-miR166e; sdf-miR166d; smi-miR166c; smn-miR166c; sor-miR166d; ssa-miR166d; sto-miR166c; tci-miR166d; tfa-miR166c; tmo-miR166c; vof-miR166d; vum-miR166c; xst-miR166b;

Rfam Alignments

>> mir-166  mir-166 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00027   21.8   0.0  cm      101      120 ~~           1          20 + ~~ 1.00 5'&3' 0.55
                                                                  ???  ??????  ???????      NC
                                                           ~~~~~~~>>>-->>>>>>-->>>>>>>~~~~~ CS
                                               mir-166   1 <[100]*UCGGACCAGGCUUCAUUCCc*[6]> 126
                                                                  UCGGACCAGGCUUCAUUCC
                                           xst-miR166b   1 <[  0]*UCGGACCAGGCUUCAUUCCU*[0]> 20
                                                           .......********************..... PP

Targets

Predicted by TargetFinder

NM_000875 ;   NM_001004439 ;   NM_001171 ;   NM_001291858 ;   NM_001351800 ;   NM_015221 ;   NR_147784 ;  

Predicted by TAPIR

NM_000875 ;   NM_001004439 ;   NM_001171 ;   NM_001291858 ;   NM_001351800 ;   NM_001367835 ;   NM_005002 ;   NM_015221 ;   NM_017811 ;   NM_021116 ;   NM_144717 ;   NM_175736 ;   NM_198900 ;   NR_147784 ;