The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. cba-miR1j

Accession: B13693743

Entry

ID: cba-miR1j
Alias: F15004.M000011.A11
Sequence: UGGAAUGUAAGGAAGUAUGUAU
Description: mir-1 microRNA precursor family predicted,partially
Species: 金毛狗  Species latin name: Cibotium barometz
TCM Name: Gouji(狗脊)  
TCM Resource (Sample number): 狗脊(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

acr-miR1q; asc-miR1r; bca-miR1s; cba-miR1j; cci-miR1p; cfe-miR1u; cit-miR1br; cmd-miR1bf; cmi-miR1m; cof-miR1p; csp-miR1n; esn-miR1j; fmu-miR1q; fsu-miR1j; hcr-miR1bb; ljp-miR1n; llu-miR1r; poe-miR1bj; pvl-miR1p; sar-miR1r; sch-miR1r; sdf-miR1m; sor-miR1bo; tch-miR1ba; zof-miR1x;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0055   20.2   0.0  cm       49       70 ~~           1          22 + ~~ 1.00 5'&3' 0.32
                               ??? ??????????????????      NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>>>>~~~~~ CS
                mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuag*[7]> 77
                               UGGAAUGUAA GAAGUAUGUA
            zof-miR1x  1 <[ 0]*UGGAAUGUAAGGAAGUAUGUAU*[0]> 22
                         ......**********************..... PP

Targets

Predicted by TargetFinder

NM_006710 ;   NM_007269 ;  

Predicted by TAPIR

NM_006710 ;