The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. cba-miR1f

Accession: B13543751

Entry

ID: cba-miR1f
Alias: F574.N000216.A25
Sequence: UGGAAUGUAAAGAAGUAUGUAUU
Description: mir-1 microRNA precursor family predicted,partially
Species: 金毛狗  Species latin name: Cibotium barometz
TCM Name: Gouji(狗脊)  
TCM Resource (Sample number): 狗脊(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR1h; Bswzz-miR1h; acr-miR1g; asc-miR1f; bca-miR1g; bci-miR1c; bhi-miR1e; bpi-miR1h; car-miR1c; cas-miR1b; cba-miR1f; cci-miR1g; cde-miR1d; cfe-miR1i; cit-miR1au; cmd-miR1ao; cmi-miR1e; cof-miR1h; cph-miR1c; cri-miR1e; csp-miR1h; csu-miR1h; ehu-miR1d; epr-miR1d; esn-miR1e; fmu-miR1g; fsu-miR1d; gel-miR1f; hcr-miR1al; lgr-miR1g; lji-miR1f; ljp-miR1g; llu-miR1h; nnu-miR1f; poe-miR1aq; ppr-miR1e; psu-miR1d; pvl-miR1h; sar-miR1h; sba-miR1f; sch-miR1h; sdf-miR1f; sdi-miR1e; sln-miR1d; sor-miR1ar; tch-miR1ak; tfa-miR1f; tja-miR1c; tki-miR1h; zof-miR1j;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0024   21.6   0.0  cm       49       71 ~~           1          23 + ~~ 1.00 5'&3' 0.26
                                                             ??? ??????????????????       NC
                                                       ~~~~~~>>>->>>>>>>>>>>>>>>>>>:~~~~~ CS
                                              mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuagu*[6]> 77
                                                             UGGAAUGUAAAGAAGUAUGUA U
                                          zof-miR1j  1 <[ 0]*UGGAAUGUAAAGAAGUAUGUAUU*[0]> 23
                                                       ......***********************..... PP

Targets

Predicted by TargetFinder

NM_001143957 ;   NM_030784 ;   NR_103535 ;  

Predicted by TAPIR

NR_103535 ;