The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR122
  5. cba-miR122c

Accession: B13609421

Entry

ID: cba-miR122c
Alias: F1789.O000011.A25
Sequence: UGGAGUGUGACAAUGGUGUUUGUU
Description: mir-122 microRNA precursor predicted,partially
Species: 金毛狗  Species latin name: Cibotium barometz
TCM Name: Gouji(狗脊)  
TCM Resource (Sample number): 狗脊(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR122d; Bswzz-miR122d; acr-miR122b; apa-miR122b; car-miR122c; cba-miR122c; cfe-miR122c; cmd-miR122d; efo-miR122b; fmu-miR122c; gel-miR122b; ljc-miR122c; pcn-miR122b; ppr-miR122c;

Rfam Alignments

>> mir-122  mir-122 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0042   19.5   0.0  cm        9       32 ~~           1          24 + ~~ 1.00 5'&3' 0.42
                                                           ?  ??????? ???????????         NC
                                                      ~~~~~<--<<<<<<<-<<<<<<<<<<<__~~~~~~ CS
                                           mir-122  1 <[8]*UGGAGUGUGACaAUGGuGUUUGUg*[42]> 74
                                                           UGGAGUGUGACAAUGGUGUUUGU
                                       ppr-miR122c  1 <[0]*UGGAGUGUGACAAUGGUGUUUGUU*[ 0]> 24
                                                      .....************************...... PP

Targets

Predicted by TargetFinder

NR_039899 ;  

Predicted by TAPIR

NR_039899 ;