The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR30
  5. car-miR30a

Accession: B12927740

Entry

ID: car-miR30a
Alias: F3769.O000193.A25
Sequence: UGUAAACAUCCCCGACUGGAAGCU
Description: mir-30 microRNA precursor predicted,partially
Species: 刺儿菜  Species latin name: Cirsium arvense
TCM Name:
TCM Resource (Sample number): 小蓟(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR30ar; Bswzz-miR30f; aar-miR30c; acr-miR30g; act-miR30; agr-miR30; asc-miR30aj; bca-miR30af; bch-miR30ak; bhi-miR30ae; bpi-miR30e; car-miR30a; cba-miR30g; cci-miR30ai; cde-miR30b; cfe-miR30ak; cid-miR30b; cit-miR30cp; cma-miR30b; cmd-miR30ax; cmi-miR30d; cmj-miR30c; cof-miR30h; cri-miR30c; cso-miR30b; csp-miR30g; csu-miR30f; cya-miR30b; ehu-miR30b; eja-miR30d; epr-miR30f; esn-miR30f; est-miR30c; fmu-miR30ag; fsu-miR30d; gel-miR30d; hcr-miR30at; hof-miR30d; kga-miR30b; lba-miR30c; lch-miR30c; lgr-miR30e; ljc-miR30d; lji-miR30d; ljn-miR30d; ljo-miR30b; ljp-miR30ag; lln-miR30d; llu-miR30d; mal-miR30d; nnu-miR30e; nte-miR30d; pav-miR30b; pfr-miR30e; poe-miR30bh; ppo-miR30; ppr-miR30ai; psu-miR30d; pvl-miR30f; sar-miR30g; sbc-miR30d; sch-miR30d; sdf-miR30i; sdi-miR30a; sgi-miR30ah; sln-miR30f; sor-miR30cm; sse-miR30; tch-miR30ai; tfa-miR30e; tki-miR30ak; vph-miR30ai; zof-miR30al;

Rfam Alignments

>> mir-30  mir-30 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   4.5e-05   28.4   0.0  cm        1       24 [~           1          24 + [~ 1.00    3' 0.50
                                                         ??????????  ???????????       NC
                                                        :<<<<<<<<<<--<<<<<<<<<<<~~~~~~ CS
                                              mir-30  1 UGuAAACAUCcUcGACuGgaAGCu*[36]> 60
                                                        UGUAAACAUCC+CGACUGGAAGCU
                                         zof-miR30al  1 UGUAAACAUCCCCGACUGGAAGCU*[ 0]> 24
                                                        ************************...... PP

Targets

Predicted by TargetFinder

NM_001369201 ;  

Predicted by TAPIR

NM_001369201 ;   NR_029846 ;