The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. lin
  5. cof-lin-4c

Accession: B21532868

Entry

ID: cof-lin-4c
Alias: F3081.M000021.A11
Sequence: UCCCUGAGACCCUAACUUGUGU
Description: lin-4 microRNA precursor predicted,partially
Species: 山茱萸  Species latin name: Cornus officinalis
TCM Name: Shanzhuyu(山茱萸)  
TCM Resource (Sample number): 山茱萸(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-lin-4c; bch-lin-4c; cci-lin-4c; cfe-lin-4d; cit-lin-4e; cmd-lin-4e; cof-lin-4c; csp-lin-4c; fsu-lin-4d; hcr-lin-4d; ljo-lin-4c; poe-lin-4e; pvl-lin-4d; sgi-lin-4c; sor-lin-4e; tch-lin-4b; tki-lin-4c;

Rfam Alignments

>> lin-4  lin-4 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0079   18.5   0.0  cm        7       28 ~~           1          22 + ~~ 1.00 5'&3' 0.50
                               ??? ???? ??? ????????       NC
                         ~~~~~-<<<-<<<<-<<<-<<<<<<<<~~~~~~ CS
                lin-4  1 <[6]*UCCCUGAGACCccAAcuuGUGA*[43]> 71
                              UCCCUGAGACCC AACUUGUG
           tki-lin-4c  1 <[0]*UCCCUGAGACCCUAACUUGUGU*[ 0]> 22
                         .....**********************...... PP

Targets

Predicted by TargetFinder

NM_001005851 ;   NM_001079512 ;   NM_001257135 ;   NM_001318873 ;   NM_002309 ;  

Predicted by TAPIR

NM_001005851 ;   NM_025245 ;   NR_038198 ;   NR_103558 ;   NR_108100 ;   NR_148221 ;