The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR30
  5. cof-miR30j

Accession: B21551128

Entry

ID: cof-miR30j
Alias: F3769.O000200.A11
Sequence: UGUAAACAUCCCCGACUGGAAGCA
Description: mir-30 microRNA precursor predicted,partially
Species: 山茱萸  Species latin name: Cornus officinalis
TCM Name: Shanzhuyu(山茱萸)  
TCM Resource (Sample number): 山茱萸(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR30au; acr-miR30i; asc-miR30am; bca-miR30ah; cci-miR30ak; cfe-miR30am; cit-miR30cu; cmd-miR30bb; cof-miR30j; csp-miR30i; csu-miR30h; eja-miR30f; epr-miR30h; esn-miR30h; fmu-miR30ai; gel-miR30f; hcr-miR30av; lch-miR30e; lji-miR30f; ljp-miR30ai; lln-miR30e; llu-miR30f; mal-miR30e; nnu-miR30g; nte-miR30e; poe-miR30bl; sdf-miR30k; sdi-miR30b; sln-miR30h; sor-miR30cq; tch-miR30ak; tki-miR30am; zof-miR30an;

Rfam Alignments

>> mir-30  mir-30 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0005   24.6   0.0  cm        1       24 [~           1          24 + [~ 1.00    3' 0.50
                         ??????????  ???????????       NC
                        :<<<<<<<<<<--<<<<<<<<<<<~~~~~~ CS
              mir-30  1 UGuAAACAUCcUcGACuGgaAGCu*[36]> 60
                        UGUAAACAUCC+CGACUGGAAGC
         zof-miR30an  1 UGUAAACAUCCCCGACUGGAAGCA*[ 0]> 24
                        ************************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR