The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR319
  5. cmd-miR319c

Accession: B18336258

Entry

ID: cmd-miR319c
Alias: F424.M000022.A29
Sequence: UUGGACUGAAGGGAGCUCCUUC
Description: MIR319 putative
Species: 香橼  Species latin name: Citrus medica
TCM Name: Foshou(佛手)   Zhiqiao(枳壳)   Zhishi(枳实)   Xiangyuan(香橼)  
TCM Resource (Sample number): 佛手(1) 枳壳(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

gma-miR319g; gma-miR319l;

Bencao Homologs

aha-miR319g; aof-miR319i; bca-miR319i; cas-miR319b; cco-miR319k; cmd-miR319c; dst-miR319g; gma-miR319f; lpu-miR319e; rja-miR319h; tch-miR319c;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00082   20.5   0.0  cm      165      185 ~.           1          21 + ~. 1.00    5' 0.52
                                 ???????  ????????    NC
                         ~~~~~~~->>>>>>>-->>>>>>>>::: CS
              MIR159  13 <[152]*UUGGAcuGAAGGGAGCUCCuu 185
                                UUGGACUGAAGGGAGCUCCUU
         tch-miR319c   1 <[  0]*UUGGACUGAAGGGAGCUCCUU 21
                         .......********************* PP

Targets

Predicted by TargetFinder

NM_001321265 ;   NM_001321266 ;   NM_001321267 ;   NM_014906 ;   NM_138799 ;   NR_048561 ;   NR_135598 ;   NR_135599 ;   NR_135600 ;   NR_135603 ;   NR_135604 ;   NR_135605 ;  

Predicted by TAPIR

NM_014906 ;   NM_024630 ;   NR_048561 ;