The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. cmd-miR1be

Accession: B19072383

Entry

ID: cmd-miR1be
Alias: F15004.M000010.A11
Sequence: UGGAAUGUAAGGAAGUAUGUAG
Description: mir-1 microRNA precursor family predicted,partially
Species: 香橼  Species latin name: Citrus medica
TCM Name: Foshou(佛手)   Zhiqiao(枳壳)   Zhishi(枳实)   Xiangyuan(香橼)  
TCM Resource (Sample number): 枳壳(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

asc-miR1q; cit-miR1bq; cmd-miR1be; poe-miR1bi; sor-miR1bn;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0049   20.4   0.0  cm       49       70 ~~           1          22 + ~~ 1.00 5'&3' 0.36
                              ??? ??????????????????      NC
                        ~~~~~~>>>->>>>>>>>>>>>>>>>>>~~~~~ CS
               mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuag*[7]> 77
                              UGGAAUGUAA GAAGUAUGUAG
          sor-miR1bn  1 <[ 0]*UGGAAUGUAAGGAAGUAUGUAG*[0]> 22
                        ......**********************..... PP

Targets

Predicted by TargetFinder

NM_001146274 ;   NM_001146283 ;   NM_001146284 ;   NM_001146285 ;   NM_001146286 ;   NM_001198525 ;   NM_001198526 ;   NM_001198527 ;   NM_001198528 ;   NM_001198529 ;   NM_001198530 ;   NM_001198531 ;   NM_001349871 ;   NM_001363501 ;   NM_001367943 ;   NM_006710 ;   NM_030756 ;   NR_040046 ;  

Predicted by TAPIR

NM_006710 ;