The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. cmd-miR1an

Accession: B18407020

Entry

ID: cmd-miR1an
Alias: F574.N000215.A25
Sequence: UGGAAUGUAAAGAAGUAUGUACU
Description: mir-1 microRNA precursor family predicted,partially
Species: 香橼  Species latin name: Citrus medica
TCM Name: Foshou(佛手)   Zhiqiao(枳壳)   Zhishi(枳实)   Xiangyuan(香橼)  
TCM Resource (Sample number): 佛手(1) 枳壳(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR1g; asc-miR1e; bca-miR1f; bpi-miR1g; cfe-miR1h; cit-miR1at; cmd-miR1an; cmi-miR1d; csp-miR1g; csu-miR1g; gel-miR1e; hcr-miR1ak; lgr-miR1f; llu-miR1g; poe-miR1ap; sar-miR1g; sch-miR1g; sor-miR1aq; tch-miR1aj; zof-miR1i;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0038   20.9   0.0  cm       49       71 ~~           1          23 + ~~ 1.00 5'&3' 0.30
                                                       ??? ??????????????????       NC
                                                 ~~~~~~>>>->>>>>>>>>>>>>>>>>>:~~~~~ CS
                                        mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuagu*[6]> 77
                                                       UGGAAUGUAAAGAAGUAUGUA U
                                    zof-miR1i  1 <[ 0]*UGGAAUGUAAAGAAGUAUGUACU*[0]> 23
                                                 ......***********************..... PP

Targets

Predicted by TargetFinder

NM_001143957 ;   NM_005562 ;   NM_030784 ;   NR_103535 ;  

Predicted by TAPIR

NM_005562 ;   NM_030784 ;   NR_103535 ;