The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR133
  5. cmd-miR133af

Accession: B18589498

Entry

ID: cmd-miR133af
Alias: F1236.L000010.A11*
Sequence: UGGUCCCCUUCAACCAGCUGC
Description: mir-133 microRNA precursor family predicted,partially
Species: 香橼  Species latin name: Citrus medica
TCM Name: Foshou(佛手)   Zhiqiao(枳壳)   Zhishi(枳实)   Xiangyuan(香橼)  
TCM Resource (Sample number): 佛手(1) 枳壳(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bswzz-miR133b; bpi-miR133ai; cit-miR133ai; cmd-miR133af; hcr-miR133ak; sor-miR133ai;

Rfam Alignments

>> mir-133  mir-133 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !   0.00032   21.6   0.0  cm       53       73 ~~           1          21 + ~~ 1.00 5'&3' 0.62
                   ????     ?? ???????         NC
             ~~~~~~>>>>----->>->>>>>>>--~~~~~~ CS
  mir-133  1 <[52]*UGGUCCCCUUCAACCAGCuGU*[14]> 87
                   UGGUCCCCUUCAACCAGCUG+
sor-miR133ai  1 <[ 0]*UGGUCCCCUUCAACCAGCUGC*[ 0]> 21
             ......*********************...... PP

Targets

Predicted by TargetFinder

NM_001145153 ;   NM_001297669 ;   NM_001297670 ;   NM_001349316 ;   NM_001349319 ;   NM_001349320 ;   NM_001349321 ;   NM_001349322 ;   NM_001349323 ;   NM_001349324 ;   NM_001349325 ;   NM_001349326 ;   NM_001364885 ;   NM_012157 ;   NM_015946 ;   NM_022744 ;   NM_025081 ;   NM_144649 ;   NR_038883 ;   NR_134559 ;   NR_146121 ;   NR_146122 ;   NR_146123 ;   NR_146124 ;   NR_146125 ;   NR_146126 ;   NR_146127 ;   NR_146128 ;   NR_146129 ;   NR_146130 ;   NR_146131 ;   NR_146132 ;   NR_146133 ;   NR_146134 ;   NR_146135 ;  

Predicted by TAPIR

NM_001005408 ;   NM_001126131 ;   NM_001190790 ;   NM_001205262 ;   NM_001256141 ;   NM_001297669 ;   NM_001297670 ;   NM_001349316 ;   NM_001349319 ;   NM_001349321 ;   NM_001349322 ;   NM_001349323 ;   NM_001349324 ;   NM_001349325 ;   NM_001364885 ;   NM_002693 ;   NM_004556 ;   NM_012157 ;   NM_020692 ;   NM_022744 ;   NM_025081 ;   NM_144649 ;   NR_038883 ;   NR_134559 ;   NR_146121 ;   NR_146122 ;   NR_146123 ;   NR_146124 ;   NR_146125 ;   NR_146126 ;   NR_146127 ;   NR_146128 ;   NR_146129 ;   NR_146130 ;   NR_146131 ;   NR_146132 ;   NR_146133 ;   NR_146134 ;   NR_146135 ;