The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR30
  5. Bjl-miR30ac

Accession: B72061100

Entry

ID: Bjl-miR30ac
Alias: F3769.J000007.A11
Sequence: UGUAAACAUCCUCGACUGG
Description: mir-30 microRNA precursor predicted,partially
Species: 焦榔  Species latin name: -
TCM Name:
TCM Resource (Sample number): 焦榔(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR30ac; asc-miR30aa; bch-miR30ab; bpi-miR30a; cfe-miR30ab; cit-miR30ae; cmd-miR30ac; csp-miR30a; hcr-miR30ab; poe-miR30ab; ppr-miR30ab; sdf-miR30a; sgi-miR30aa; sor-miR30af; tki-miR30ab; vph-miR30aa;

Rfam Alignments

>> mir-30  mir-30 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0022   21.8   0.0  cm        1       19 [~           1          19 + [~ 1.00    3' 0.47
              ??????????  ??????       NC
             :<<<<<<<<<<--<<<<<<~~~~~~ CS
   mir-30  1 UGuAAACAUCcUcGACuGg*[41]> 60
             UGUAAACAUCCUCGACUGG
vph-miR30aa  1 UGUAAACAUCCUCGACUGG*[ 0]> 19
             *******************...... PP

Targets

Predicted by TargetFinder

NM_001271815 ;   NM_001288973 ;   NM_001322253 ;   NM_001322256 ;   NM_001322257 ;   NM_001351610 ;   NM_001351611 ;   NM_001351612 ;   NM_001351613 ;   NM_001351614 ;   NM_001351615 ;   NM_001351616 ;   NM_001351617 ;   NM_001351618 ;   NM_001351619 ;   NM_001351620 ;   NM_001351632 ;   NM_003474 ;   NM_007052 ;   NM_007195 ;   NM_013955 ;   NM_015106 ;   NM_032832 ;   NM_178505 ;   NR_003024 ;   NR_034130 ;   NR_110241 ;   NR_134507 ;  

Predicted by TAPIR

NM_001145901 ;   NM_001318374 ;   NM_001322253 ;   NM_001322256 ;   NM_001322257 ;   NM_001369201 ;   NM_015106 ;   NM_019067 ;   NR_029846 ;   NR_134507 ;   NR_135557 ;