The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR30
  5. Bjl-miR30ab

Accession: B72061099

Entry

ID: Bjl-miR30ab
Alias: F3769.J000006.A11
Sequence: UGUAAACAUCCCCGACUGG
Description: mir-30 microRNA precursor predicted,partially
Species: 焦榔  Species latin name: -
TCM Name:
TCM Resource (Sample number): 焦榔(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR30ab; bca-miR30aa; bch-miR30aa; cfe-miR30aa; cit-miR30ad; cmd-miR30ab; cof-miR30a; csu-miR30a; hcr-miR30aa; poe-miR30aa; ppr-miR30aa; sor-miR30ae; tch-miR30aa; tki-miR30aa; zof-miR30aa;

Rfam Alignments

>> mir-30  mir-30 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0045   20.7   0.0  cm        1       19 [~           1          19 + [~ 1.00    3' 0.53
              ??????????  ??????       NC
             :<<<<<<<<<<--<<<<<<~~~~~~ CS
   mir-30  1 UGuAAACAUCcUcGACuGg*[41]> 60
             UGUAAACAUCC+CGACUGG
zof-miR30aa  1 UGUAAACAUCCCCGACUGG*[ 0]> 19
             *******************...... PP

Targets

Predicted by TargetFinder

NM_000332 ;   NM_001077261 ;   NM_001080496 ;   NM_001128164 ;   NM_001144937 ;   NM_001206654 ;   NM_001318374 ;   NM_001357857 ;   NM_001369201 ;   NM_006312 ;   NM_006805 ;   NM_020632 ;   NM_032048 ;   NM_130840 ;   NM_130841 ;   NR_033342 ;   NR_034130 ;   NR_131168 ;  

Predicted by TAPIR

NM_000332 ;   NM_001080496 ;   NM_001128164 ;   NM_001318374 ;   NM_001357857 ;   NM_001369201 ;   NM_003809 ;   NM_006805 ;   NM_130840 ;   NM_130841 ;   NM_172089 ;   NR_033342 ;   NR_037146 ;