The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. tki-miR1j

Accession: B67933321

Entry

ID: tki-miR1j
Alias: F5708.K000061.A25
Sequence: UGGAAUGUAAAGAAGUAUGU
Description: mir-1 microRNA precursor family predicted,partially
Species: 栝楼  Species latin name: Trichosanthes kirilowii
TCM Name: Tianhuafen(天花粉)   Gualou(瓜蒌)   Gualouzi(瓜蒌子)   Chaogualouzi(炒瓜蒌子)   Gualoupi(瓜蒌皮)  
TCM Resource (Sample number): 天花粉(1) 瓜蒌皮(1) 瓜蒌(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR1l; Bswzz-miR1l; abs-miR1d; acr-miR1l; act-miR1d; aeu-miR1d; ala-miR1c; asc-miR1m; bca-miR1n; bch-miR1c; bhi-miR1g; bpi-miR1n; cba-miR1g; cci-miR1m; cde-miR1e; cfe-miR1p; cit-miR1bk; cma-miR1f; cmd-miR1ay; cmi-miR1j; cph-miR1d; cri-miR1f; csp-miR1k; csu-miR1l; cya-miR1c; ehu-miR1e; eja-miR1c; epr-miR1e; esn-miR1g; est-miR1c; fmu-miR1m; fsu-miR1f; fth-miR1d; gel-miR1j; gja-miR1d; hcr-miR1au; hof-miR1d; lch-miR1d; lgr-miR1k; lji-miR1h; ljp-miR1j; lln-miR1d; llu-miR1m; mal-miR1d; nja-miR1e; nnu-miR1h; nsc-miR1e; nte-miR1d; pas-miR1d; pav-miR1b; pfr-miR1e; pgi-miR1d; pmu-miR1d; poe-miR1bd; ppo-miR1c; ppr-miR1h; psu-miR1g; pvl-miR1l; run-miR1c; sar-miR1l; sba-miR1g; sch-miR1n; sdf-miR1i; sgi-miR1f; sln-miR1f; sor-miR1bg; sse-miR1d; tch-miR1au; tfa-miR1i; tki-miR1j; vtr-miR1a; zof-miR1t;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0048   20.3   0.0  cm       49       68 ~~           1          20 + ~~ 1.00 5'&3' 0.30
                                                                 ??? ????????????????      NC
                                                           ~~~~~~>>>->>>>>>>>>>>>>>>>~~~~~ CS
                                                  mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGu*[9]> 77
                                                                 UGGAAUGUAAAGAAGUAUGU
                                              zof-miR1t  1 <[ 0]*UGGAAUGUAAAGAAGUAUGU*[0]> 20
                                                           ......********************..... PP

Targets

Predicted by TargetFinder

NM_000655 ;   NM_000834 ;   NM_000892 ;   NM_001143957 ;   NM_001163391 ;   NM_001164386 ;   NM_001164387 ;   NM_001164388 ;   NM_001164389 ;   NM_001174156 ;   NM_001278458 ;   NM_001278460 ;   NM_001278461 ;   NM_001318394 ;   NM_001318396 ;   NM_001318864 ;   NM_001362969 ;   NM_001365670 ;   NM_001365671 ;   NM_001365672 ;   NM_001365673 ;   NM_001365674 ;   NM_001365675 ;   NM_001368124 ;   NM_004352 ;   NM_005562 ;   NM_014900 ;   NM_016010 ;   NM_016255 ;   NM_016340 ;   NM_017563 ;   NM_017752 ;   NM_030784 ;   NM_144660 ;   NM_153442 ;   NR_003679 ;   NR_015436 ;   NR_029467 ;   NR_029780 ;   NR_038244 ;   NR_038245 ;   NR_038246 ;   NR_103535 ;   NR_136192 ;   NR_136193 ;   NR_136194 ;   NR_136197 ;   NR_136198 ;   NR_136199 ;   NR_136200 ;   NR_136201 ;   NR_146713 ;   NR_152235 ;   NR_152238 ;   NR_152239 ;   NR_152242 ;   NR_156423 ;  

Predicted by TAPIR

NM_000892 ;   NM_001161560 ;   NM_001161561 ;   NM_001161562 ;   NM_001161563 ;   NM_001161564 ;   NM_001161565 ;   NM_001161566 ;   NM_001166018 ;   NM_001318394 ;   NM_001318396 ;   NM_001362969 ;   NM_001370959 ;   NM_005562 ;   NM_007252 ;   NM_015028 ;   NM_016010 ;   NM_016255 ;   NM_017752 ;   NR_003679 ;   NR_015436 ;   NR_136192 ;   NR_136193 ;   NR_136194 ;   NR_136197 ;   NR_136198 ;   NR_136199 ;   NR_136200 ;   NR_136201 ;   NR_146713 ;   NR_152235 ;   NR_152238 ;   NR_152239 ;   NR_152242 ;   NR_156423 ;