The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. sar-miR1n

Accession: B58953239

Entry

ID: sar-miR1n
Alias: F5708.L000143.A11
Sequence: GGAAUGUAAAGAAGUAUGUAG
Description: mir-1 microRNA precursor family predicted,partially
Species: 丁香蒲桃  Species latin name: Syzygium aromaticum
TCM Name:
TCM Resource (Sample number): 母丁香(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

hcr-miR1aw; sar-miR1n;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0093   19.3   0.0  cm       50       70 ~~           1          21 + ~~ 1.00 5'&3' 0.33
                               ?? ??????????????????      NC
                         ~~~~~~>>->>>>>>>>>>>>>>>>>>~~~~~ CS
                mir-1  1 <[49]*GGAAUgUAAaGAAGuAUGuag*[7]> 77
                               GGAAUGUAAAGAAGUAUGUAG
            sar-miR1n  1 <[ 0]*GGAAUGUAAAGAAGUAUGUAG*[0]> 21
                         ......*********************..... PP

Targets

Predicted by TargetFinder

NM_000655 ;   NM_000833 ;   NM_000892 ;   NM_001134407 ;   NM_001134408 ;   NM_001145373 ;   NM_001201477 ;   NM_001318394 ;   NM_001318396 ;   NM_005562 ;   NM_013254 ;   NM_016354 ;   NM_018092 ;   NM_133448 ;   NM_153700 ;   NR_015436 ;   NR_029467 ;   NR_146078 ;   NR_152235 ;   NR_152238 ;   NR_152239 ;   NR_152242 ;  

Predicted by TAPIR

NM_000833 ;   NM_000892 ;   NM_001134407 ;   NM_001134408 ;   NM_001161560 ;   NM_001161561 ;   NM_001161562 ;   NM_001161563 ;   NM_001161564 ;   NM_001161565 ;   NM_001161566 ;   NM_001166018 ;   NM_001201477 ;   NM_001318394 ;   NM_001318396 ;   NM_001370959 ;   NM_005562 ;   NM_007252 ;   NM_015028 ;   NM_018092 ;   NM_021637 ;   NR_015436 ;   NR_152235 ;   NR_152238 ;   NR_152239 ;   NR_152242 ;