The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. sRNA Atlas
  4. F1000
  5. B52632415

Accession: B52632415

Entry

ID: -
Alias: F1000.P000293.A25
Sequence: GGGUUCAAGUCCCGCCCCGGGCACC
Description: tmRNA transfer-messenger RNA
Species: 紫苏  Species latin name: Perilla frutescens
TCM Names: Zisuzi(紫苏子) Zisuye(紫苏叶) Zisugeng(紫苏梗)
TCM Resource (Sample number): 紫苏(1)
Evidence support:
Experimental status: Not yet
Database: sRNA Atlas

Homologs

miRBase Homologs

None

Bencao Homologs

B12156961; B28146135; B52632415; B62495656;

Rfam Alignments

>> tmRNA  transfer-messenger RNA
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.037    9.8   0.0  cm      329      354 ~]           1          16 + ~. 1.00    5' 0.69
                                                                           ??            NC
                                                       ~~~~~~~<<<_______>>>>>]]]]]]]:::: CS
                                             tmRNA   1 <[328]*GGGUUCGAuUCCCcCCAgCUCCACCa 354
                                                              GGGUUC+A UCCC C
                                 F1000.P000293.A25   1 <[  0]*GGGUUCAAGUCCCGC----------C 16
                                                       .......***************..........* PP

Targets

Predicted by TargetFinder


Predicted by TAPIR