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  3. sRNA Atlas
  4. F10
  5. B34368618

Accession: B34368618

Entry

ID: gmc-miR171
Alias: F10.L000003.A3D
Sequence: UGAUUGAGCCGUGCCAAUAUC
Description: MIR171 putative
Species: 秦艽  Species latin name: Gentiana macrophylla
TCM Names: Qinjiao(秦艽)  
TCM Resource (Sample number): 秦艽(1)
Evidence support: Mirbase|infernal
Experimental status: Not yet
Database: miRNA Atlas


Rfam Alignments

>> MIR171_1  microRNA MIR171_1
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0028   22.4   0.0  cm       69       89 ~~           1          21 + ~~ 1.00 5'&3' 0.48
                                                              ?? ??????  ?????????       NC
                                                       ~~~~~~_>>->>>>>>-->>>>>>>>>~~~~~~ CS
                                           MIR171_1  1 <[68]*UGAUUGAGCCGUgCCAAuAUC*[12]> 101
                                                             UGAUUGAGCCGUGCCAAUAUC
                                        sto-miR171a  1 <[ 0]*UGAUUGAGCCGUGCCAAUAUC*[ 0]> 21
                                                       ......*********************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR