The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. sRNA Atlas
  4. F95
  5. B00015274

Accession: B00015274

Entry

ID: -
Alias: F95.J000890.A25
Sequence: CAACUUUCAACAACGGAUC
Description: 5_8S_rRNA 5.8S ribosomal RNA
Species: 黄花蒿  Species latin name: Artemisia annua
TCM Names: Qinghao(青蒿)  
TCM Resource (Sample number): 青蒿(1)
Evidence support:
Experimental status: Not yet
Database: sRNA Atlas

Homologs

miRBase Homologs

None

Bencao Homologs

B00015274; B00217874; B00693956; B01031451; B01316388; B02044526; B02214008; B02873461; B03309627; B03674733; B04105648; B04455005; B05111647; B05507533; B05757116; B06344181; B07256491; B07586178; B08179889; B08834225; B09279189; B09974066; B10457904; B10824348; B11515873; B12092687; B12303187; B12649871; B13075956; B13313349; B13463576; B13783456; B14046073; B14445663; B14718558; B15187400; B15754747; B16209274; B16739481; B17300193; B17671430; B19825914; B20054937; B20394413; B20819481; B21196362; B22493482; B22726803; B25048254; B25735137; B26505973; B27136369; B27726013; B28033303; B28415821; B28766427; B28928229; B29485742; B30360977; B31038250; B31849311; B32256981; B32665229; B32877228; B33586346; B33815020; B33946838; B34398707; B34604402; B34920597; B35610671; B35999790; B36239383; B36507515; B37003000; B37488466; B37848685; B38076608; B38313883; B38472674; B38672588; B39426091; B40072799; B40458121; B40850342; B41085045; B41558320; B42141259; B42366981; B42654503; B42997921; B43383783; B44486076; B45327396; B45670122; B47042379; B47270558; B47551208; B47908966; B48185439; B49426423; B49668429; B49873351; B50399611; B50706425; B51418783; B51683837; B51965954; B52284434; B53048868; B53820815; B54311093; B55451805; B55659665; B56165395; B56574711; B56869266; B57340794; B57818619; B58290311; B59244616; B59678076; B60047392; B60329787; B61179573; B61248314; B61698997; B62005980; B62403378; B62623284; B62819723; B63936113; B64334346; B65278371; B66285982; B67215005; B68557790; B68951398; B69247656; B69556530; B69885358; B70312751; B71143575; B71778739; B72294737; B73349949;

Rfam Alignments

>> 5_8S_rRNA  5.8S ribosomal RNA
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.085   10.1   0.0  cm        1       18 [~           2          19 + .~ 1.00    3' 0.39
                                                                                       NC
                                                             ::::::::::::::::::~~~~~~~ CS
                                                5_8S_rRNA  1 AACuuUuAgCGAUGGAUg*[136]> 154
                                                             AACUUU+A+C+A GGAU
                                          F95.J000890.A25  2 AACUUUCAACAACGGAUC*[  0]> 19
                                                             ******************....... PP

Targets

Predicted by TargetFinder

NM_000122 ;   NM_001009921 ;   NM_001130916 ;   NM_001130963 ;   NM_001257998 ;   NM_001271602 ;   NM_001297716 ;   NM_001303136 ;   NM_001303416 ;   NM_001303418 ;   NM_001306093 ;   NM_001306210 ;   NM_001308165 ;   NM_001349292 ;   NM_001349293 ;   NM_001349294 ;   NM_001349295 ;   NM_001349296 ;   NM_001349297 ;   NM_001349298 ;   NM_003255 ;   NM_003799 ;   NM_004612 ;   NM_007017 ;   NM_014606 ;   NM_014979 ;   NM_015257 ;   NM_015303 ;   NM_017667 ;   NM_018036 ;   NM_152753 ;   NM_174911 ;   NM_175907 ;   NM_178424 ;   NR_126437 ;   NR_134680 ;   NR_156466 ;  

Predicted by TAPIR