The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. sRNA Atlas
  4. F27
  5. B00001826

Accession: B00001826

Entry

ID: -
Alias: F27.I000012.A25
Sequence: AUCGAUGAAGAACGUAGC
Description: 5_8S_rRNA 5.8S ribosomal RNA
Species: 黄花蒿  Species latin name: Artemisia annua
TCM Names: Qinghao(青蒿)  
TCM Resource (Sample number): 青蒿(1)
Evidence support:
Experimental status: Not yet
Database: sRNA Atlas

Homologs

miRBase Homologs

None

Bencao Homologs

B00001826; B00187848; B00460206; B00660429; B01011923; B01550235; B02017777; B03277422; B03663542; B03873640; B05074168; B05499279; B05724532; B06111411; B07235731; B07550364; B07952340; B08154773; B08457053; B08566014; B08817106; B09259328; B09553883; B09955266; B10447334; B10811412; B11488854; B12288116; B12607762; B13447727; B14034186; B14421042; B14688790; B15172675; B15727662; B15881207; B16178614; B16386044; B16710916; B19815009; B20372639; B20779461; B21165688; B21971443; B22470457; B22720842; B23127326; B23233495; B23528776; B24412797; B24736845; B25023579; B25724364; B26006120; B27123412; B27695199; B28028395; B28381004; B28748990; B29463711; B29814140; B30331354; B31002635; B31830539; B32647380; B32832421; B33569549; B33795132; B33924341; B34370583; B34589285; B34888630; B35118244; B35595148; B36230778; B36453446; B36993219; B37480116; B37821898; B38064080; B38289268; B38945892; B39400520; B40039068; B40434410; B41069711; B41533845; B42112194; B42625221; B42965418; B43358586; B43812020; B43970641; B44168641; B44455945; B45296398; B45634289; B46531579; B47036429; B47246082; B47543153; B47881572; B48111909; B49067440; B49404144; B49660341; B49853415; B50372290; B50689239; B51137055; B51658881; B51938063; B52221826; B53000829; B53437602; B53619194; B53806997; B54270808; B54669236; B54899171; B55204971; B55641427; B56143089; B56543293; B56854335; B57068500; B57318654; B57805794; B58268902; B58625470; B59215763; B59643456; B59963708; B60023728; B60771140; B61174918; B61229063; B61672047; B61986344; B62389795; B62600429; B62799763; B63918650; B64310119; B64768715; B65253230; B65530664; B65725966; B66252248; B66525078; B66818187; B67181603; B68538001; B68785659; B68928981; B69212672; B69532750; B69868203; B70123925; B70302360; B70390049; B70460039; B71131713; B71753930; B72278720; B72856918; B73331045;

Rfam Alignments

>> 5_8S_rRNA  5.8S ribosomal RNA
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.049   10.9   0.0  cm       32       49 ~~           1          18 + ~~ 1.00 5'&3' 0.44
                                                                     ????????          NC
                                                       ~~~~~~::::::::((((<<<<__~~~~~~~ CS
                                          5_8S_rRNA  1 <[31]*aUCGAUGAAgaaCGCaGC*[105]> 154
                                                             AUCGAUGAAGAACG AGC
                                    F27.I000012.A25  1 <[ 0]*AUCGAUGAAGAACGUAGC*[  0]> 18
                                                       ......******************....... PP

Targets

Predicted by TargetFinder

NM_000390 ;   NM_000403 ;   NM_000555 ;   NM_000765 ;   NM_001008216 ;   NM_001098614 ;   NM_001098615 ;   NM_001127621 ;   NM_001145853 ;   NM_001168499 ;   NM_001172656 ;   NM_001172659 ;   NM_001184854 ;   NM_001184856 ;   NM_001195553 ;   NM_001256497 ;   NM_001256789 ;   NM_001256790 ;   NM_001271826 ;   NM_001280539 ;   NM_001282862 ;   NM_001288805 ;   NM_001301275 ;   NM_001312686 ;   NM_001318786 ;   NM_001318788 ;   NM_001318794 ;   NM_001318797 ;   NM_001318802 ;   NM_001320959 ;   NM_001331185 ;   NM_001331186 ;   NM_001331187 ;   NM_001331189 ;   NM_001331190 ;   NM_001348334 ;   NM_001348335 ;   NM_001348336 ;   NM_001351937 ;   NM_001351938 ;   NM_001353837 ;   NM_001353838 ;   NM_001362517 ;   NM_001362518 ;   NM_001362519 ;   NM_001364501 ;   NM_001369370 ;   NM_001369371 ;   NM_001369372 ;   NM_001369373 ;   NM_001369374 ;   NM_001370248 ;   NM_001370249 ;   NM_001370250 ;   NM_001370254 ;   NM_001567 ;   NM_001861 ;   NM_002193 ;   NM_003448 ;   NM_003749 ;   NM_003850 ;   NM_005183 ;   NM_006005 ;   NM_012285 ;   NM_012311 ;   NM_014813 ;   NM_015435 ;   NM_015512 ;   NM_015871 ;   NM_017533 ;   NM_017566 ;   NM_018235 ;   NM_020972 ;   NM_020988 ;   NM_022068 ;   NM_030624 ;   NM_031292 ;   NM_139075 ;   NM_145250 ;   NM_145313 ;   NM_152311 ;   NM_175062 ;   NM_178151 ;   NM_178152 ;   NM_178153 ;   NM_182523 ;   NM_183419 ;   NM_194320 ;   NM_201435 ;   NR_033399 ;   NR_045609 ;   NR_135065 ;   NR_138585 ;   NR_147833 ;  

Predicted by TAPIR