The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. sRNA Atlas
  4. F1000
  5. B07398782

Accession: B07398782

Entry

ID: -
Alias: F1000.M000181.A25
Sequence: CGGGUUCAAGUCCCGCCCCGGG
Description: tmRNA transfer-messenger RNA
Species: 穿心莲  Species latin name: Andrographis paniculata
TCM Names: Chuanxinlian(穿心莲)  
TCM Resource (Sample number): 穿心莲(1)
Evidence support:
Experimental status: Not yet
Database: sRNA Atlas

Homologs

miRBase Homologs

None

Bencao Homologs

B07398782; B12156955; B28146123; B47110846; B62495652;

Rfam Alignments

>> tmRNA  transfer-messenger RNA
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0084   11.7   0.0  cm      328      354 ~]           1          17 + ~. 1.00    5' 0.71
                                                                                ?            NC
                                                          ~~~~~~~<<<<_______>>>>>]]]]]]]:::: CS
                                                tmRNA   1 <[327]*gGGGUUCGAuUCCCcCCAgCUCCACCa 354
                                                                 :GGGUUC+A UCCC:C
                                    F1000.M000181.A25   1 <[  0]*CGGGUUCAAGUCCCGC----------C 17
                                                          .......****************..........* PP

Targets

Predicted by TargetFinder


Predicted by TAPIR