The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. Bsr-miR159d

Accession: B72278029

Entry

ID: Bsr-miR159d
Alias: F14.K000013.B25
Sequence: UUUGGAUUGAAGGGAGCUCU
Description: microRNA MIR159 predicted
Species: 遂仁  Species latin name: -
TCM Name:
TCM Resource (Sample number): 蕤仁(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Yes

Homologs

miRBase Homologs

None

Bencao Homologs

Bbj-miR159b; Bjl-miR159c; Bsr-miR159d; Bswzz-miR159a; Btmz-miR159b; aan-miR159c; aar-miR159c; abi-miR159d; abs-miR159; acn-miR159b; acr-miR159d; acs-miR159a; act-miR159b; ade-miR159; aeu-miR159a; agr-miR159; aha-miR159d; aju-miR159b; ala-miR159d; aof-miR159a; aox-miR159a; apa-miR159a; apl-miR159ad; asc-miR159a; asi-miR159; ath-miR159c; att-miR159; ave-miR159d; bca-miR159c; bch-miR159e; bhi-miR159a; bja-miR159d; bmj-miR159d; bpi-miR159a; cab-miR159; car-miR159a; cas-miR159a; cba-miR159a; ccm-miR159b; cco-miR159ad; ccs-miR159ad; cde-miR159a; cga-miR159; che-miR159; cid-miR159a; cit-miR159b; cja-miR159; clo-miR159b; cmd-miR159b; cmi-miR159a; cmj-miR159b; cmn-miR159a; cmo-miR159d; cof-miR159c; cor-miR159b; cpe-miR159c; cpi-miR159d; cpn-miR159; cri-miR159a; csm-miR159c; cso-miR159d; csp-miR159ac; csu-miR159d; dlo-miR159; dst-miR159d; efo-miR159a; ehu-miR159c; eja-miR159d; epr-miR159c; esc-miR159b; est-miR159d; fmu-miR159b; fsu-miR159b; fth-miR159; fvu-miR159; gbi-miR159d; gel-miR159a; gja-miR159c; gli-miR159c; gma-miR159ad; gmc-miR159d; gpe-miR159d; gsi-miR159d; gur-miR159a; hcr-miR159b; hmu-miR159d; hoc-miR159; hof-miR159c; hvu-miR159; ija-miR159d; ili-miR159b; ini-miR159d; kga-miR159c; lba-miR159a; lcr-miR159a; lfo-miR159d; lgr-miR159a; ljc-miR159b; lji-miR159; ljn-miR159b; ljo-miR159a; ljp-miR159b; llc-miR159d; lln-miR159a; llu-miR159a; lpu-miR159ad; lsi-miR159; mal-miR159c; mca-miR159ad; mch-miR159c; mco-miR159; mda-miR159a; nca-miR159d; nin-miR159; nja-miR159c; nnu-miR159ad; nsc-miR159d; nte-miR159d; ofi-miR159a; pas-miR159e; pav-miR159ad; pca-miR159a; pch-miR159; pci-miR159a; pcl-miR159d; pcn-miR159d; pfr-miR159d; pgi-miR159b; pla-miR159b; pmu-miR159d; poe-miR159d; por-miR159ad; ppo-miR159; ppr-miR159a; psu-miR159ad; ptn-miR159a; pvl-miR159ad; rcd-miR159a; rch-miR159ad; rcr-miR159ad; rja-miR159ad; rte-miR159d; run-miR159; sad-miR159a; sar-miR159b; sba-miR159b; sbc-miR159c; sca-miR159c; sch-miR159b; sdf-miR159; sdi-miR159b; sgl-miR159d; sjp-miR159; smi-miR159ad; smn-miR159c; sor-miR159c; spo-miR159c; ssa-miR159a; sse-miR159a; ssu-miR159c; sto-miR159ad; tci-miR159c; tfa-miR159; tja-miR159; tki-miR159a; tmo-miR159b; tru-miR159; twi-miR159d; vof-miR159d; vtr-miR159; vum-miR159d; xst-miR159a; zmu-miR159b; zof-miR159b;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.002   18.8   0.0  cm      164      183 ~~           1          20 + ~~ 1.00 5'&3' 0.45
                                                                   ???????  ????????        NC
                                                          ~~~~~~~-->>>>>>>-->>>>>>>>:~~~~~~ CS
                                               MIR159   1 <[163]*uUUGGAcuGAAGGGAGCUCC*[13]> 196
                                                                 UUUGGA UGAAGGGAGCUC+
                                          zof-miR159b   1 <[  0]*UUUGGAUUGAAGGGAGCUCU*[ 0]> 20
                                                          .......********************...... PP

Targets

Predicted by TargetFinder

NM_000506 ;   NM_001079516 ;   NM_001080534 ;   NM_001113490 ;   NM_001143974 ;   NM_001167671 ;   NM_001167672 ;   NM_001195272 ;   NM_001271634 ;   NM_001308220 ;   NM_001311257 ;   NM_001321957 ;   NM_001321958 ;   NM_001321959 ;   NM_001321960 ;   NM_001329919 ;   NM_005185 ;   NM_005444 ;   NM_005544 ;   NM_005578 ;   NM_014906 ;   NM_019893 ;   NM_033266 ;   NM_133265 ;   NM_138694 ;   NM_170724 ;   NR_003950 ;   NR_048561 ;   NR_073390 ;   NR_135904 ;   NR_146089 ;  

Predicted by TAPIR

NM_001025356 ;   NM_001080534 ;   NM_001142678 ;   NM_001142679 ;   NM_001170629 ;   NM_001195272 ;   NM_001204803 ;   NM_001271634 ;   NM_001311257 ;   NM_001329919 ;   NM_003967 ;   NM_005185 ;   NM_005444 ;   NM_005445 ;   NM_014906 ;   NM_020920 ;   NM_054107 ;   NM_138694 ;   NM_170724 ;   NR_048561 ;   NR_073390 ;   NR_146089 ;