The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR146
  5. Bjl-miR146s

Accession: B72212541

Entry

ID: Bjl-miR146s
Alias: F58447.K000031.A25
Sequence: UGAGAACUGAAUUCCAUGGA
Description: microRNA mir-146 predicted
Species: 焦榔  Species latin name: -
TCM Name:
TCM Resource (Sample number): 焦榔(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

None

Rfam Alignments

>> mir-146  microRNA mir-146
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0028   19.9   0.0  cm       16       35 ~~           1          20 + ~~ 1.00 5'&3' 0.40
                                                               ????????       ???       NC
                                                       ~~~~~~--<<<<<<<<-------<<<~~~~~~ CS
                                            mir-146  1 <[15]*UGAGAACUGAAUUCCAUgGg*[55]> 90
                                                             UGAGAACUGAAUUCCAUGG
                                        Bjl-miR146s  1 <[ 0]*UGAGAACUGAAUUCCAUGGA*[ 0]> 20
                                                       ......********************...... PP

Targets

Predicted by TargetFinder

NM_001003674 ;   NM_001003675 ;   NM_001039960 ;   NM_001198950 ;   NM_001258401 ;   NM_001271052 ;   NM_001276249 ;   NM_001276251 ;   NM_001290223 ;   NM_001330242 ;   NM_001330243 ;   NM_001353575 ;   NM_001354045 ;   NM_001354431 ;   NM_001354432 ;   NM_001365596 ;   NM_001365597 ;   NM_001365598 ;   NM_001365599 ;   NM_001365600 ;   NM_001365601 ;   NM_001365602 ;   NM_001365603 ;   NM_001365604 ;   NM_001365605 ;   NM_001380 ;   NM_013302 ;   NM_013447 ;   NM_014023 ;   NM_015011 ;   NM_015483 ;   NM_017892 ;   NM_024560 ;   NM_032109 ;   NM_181481 ;   NM_181482 ;   NM_207363 ;   NR_024157 ;   NR_034027 ;   NR_034130 ;   NR_038216 ;   NR_038217 ;   NR_038218 ;   NR_038219 ;   NR_110828 ;   NR_134653 ;   NR_148462 ;   NR_148463 ;   NR_148464 ;   NR_148465 ;  

Predicted by TAPIR

NM_001172681 ;   NM_001172682 ;   NM_001206616 ;   NM_001256369 ;   NM_001267036 ;   NM_001267037 ;   NM_001318124 ;   NM_001318125 ;   NM_001353575 ;   NM_001354045 ;   NM_001365803 ;   NM_001365805 ;   NM_003309 ;   NM_006641 ;   NM_012244 ;   NM_014023 ;   NM_014455 ;   NM_015110 ;   NM_015483 ;   NM_031200 ;   NM_032109 ;   NM_032562 ;   NM_152320 ;   NM_182728 ;   NM_207363 ;   NR_024157 ;   NR_024628 ;   NR_024629 ;   NR_027708 ;   NR_027709 ;   NR_034130 ;   NR_049767 ;   NR_134653 ;   NR_148462 ;   NR_148463 ;   NR_148464 ;   NR_148465 ;