The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR27
  5. Bjl-miR27r

Accession: B72217020

Entry

ID: Bjl-miR27r
Alias: F64110.L000118.A25*
Sequence: UUCACAGUGGCUAAGUUCCGA
Description: microRNA mir-27 predicted
Species: 焦榔  Species latin name: -
TCM Name:
TCM Resource (Sample number): 焦榔(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR27r; Bswzz-miR27e; asc-miR27n; bca-miR27r; bch-miR27l; cas-miR27d; cba-miR27d; cci-miR27j; cfe-miR27q; cit-miR27ch; cmd-miR27bf; cof-miR27k; csp-miR27f; csu-miR27f; fmu-miR27k; hcr-miR27az; kga-miR27e; ljp-miR27j; llu-miR27i; poe-miR27bi; ppr-miR27i; sch-miR27g; sdf-miR27g; sgi-miR27i; sor-miR27cg; tch-miR27i; tki-miR27i; vph-miR27h; zof-miR27q;

Rfam Alignments

>> mir-27  microRNA mir-27
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0015   20.3   0.0  cm       56       75 ~.           1          20 + ~. 1.00    5' 0.50
                                                                 ?????  ???????????   NC
                                                           ~~~~~~>>>>>-->>>>>>>>>>>:: CS
                                                 mir-27 15 <[41]*uUCACAGuGGCUAAGuuCuG 75
                                                                 UUCACAGUGGCUAAGUUC+G
                                             zof-miR27q  1 <[ 0]*UUCACAGUGGCUAAGUUCCG 20
                                                           ......******************** PP

Targets

Predicted by TargetFinder

NM_000489 ;   NM_001079524 ;   NM_001079525 ;   NM_006452 ;   NM_021916 ;   NM_138270 ;  

Predicted by TAPIR

NM_001079524 ;   NM_001079525 ;   NM_006452 ;   NM_021916 ;   NR_026961 ;