The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR9
  5. Bjl-miR9a

Accession: B72071694

Entry

ID: Bjl-miR9a
Alias: F4396.L000037.A25
Sequence: UCUUUGGUUAUCUAGCUGUAU
Description: mir-9/mir-79 microRNA precursor family predicted,partially
Species: 焦榔  Species latin name: -
TCM Name:
TCM Resource (Sample number): 焦榔(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR9a; acr-miR9a; bca-miR9a; cco-miR9; cfe-miR9a; cit-miR9a; cmd-miR9a; cof-miR9a; csu-miR9a; fsu-miR9a; hcr-miR9a; lba-miR9a; ljc-miR9a; ljo-miR9a; llu-miR9a; mal-miR9a; pfr-miR9a; poe-miR9a; ppr-miR9a; pvl-miR9a; rcr-miR9a; sba-miR9a; sgi-miR9a; sor-miR9a; tch-miR9a; tfa-miR9a; tki-miR9a; tmo-miR9a; zof-miR9a;

Rfam Alignments

>> mir-9  mir-9/mir-79 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.003   21.1   0.0  cm        2       22 ~~           1          21 + ~~ 1.00 5'&3' 0.33
                                                               ???????????????  ??       NC
                                                        ~~~~~::<<<<<<<<<<<<<<<--<<~~~~~~ CS
                                               mir-9  1 <[1]*UCUUuGGUuaucUAGCUGUAU*[40]> 62
                                                             UCUUUGGUUAUCUAGCUGUAU
                                           zof-miR9a  1 <[0]*UCUUUGGUUAUCUAGCUGUAU*[ 0]> 21
                                                        .....*********************...... PP

Targets

Predicted by TargetFinder

NM_001256850 ;   NM_001267550 ;   NM_001282932 ;   NM_001363507 ;   NM_001363509 ;   NM_001363616 ;   NM_003319 ;   NM_133378 ;   NM_133432 ;   NM_133437 ;   NM_152589 ;   NR_046639 ;   NR_120551 ;   NR_120552 ;   NR_149134 ;   NR_149135 ;   NR_149136 ;  

Predicted by TAPIR

NM_000534 ;   NM_001025579 ;   NM_001128143 ;   NM_001128144 ;   NM_001282932 ;   NM_001289408 ;   NM_001289409 ;   NM_001321044 ;   NM_001321045 ;   NM_001321046 ;   NM_001321047 ;   NM_001321048 ;   NM_001330129 ;   NM_001363616 ;   NM_006961 ;   NM_030808 ;   NM_152589 ;   NR_033884 ;   NR_110332 ;