The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. Bbj-miR1c

Accession: B71294211

Entry

ID: Bbj-miR1c
Alias: F574.M000062.A25
Sequence: UGGAAUGUAAAGAAGUAUGUAU
Description: mir-1 microRNA precursor family predicted,partially
Species: 荜茄  Species latin name: -
TCM Name:
TCM Resource (Sample number): 荜茄(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bbj-miR1c; Bjl-miR1d; Bswzz-miR1e; aan-miR1; aar-miR1d; abi-miR1; acn-miR1b; aco-miR1; acr-miR1e; act-miR1c; ade-miR1; aer-miR1c; agr-miR1b; aox-miR1a; apa-miR1; aqi-miR1; asc-miR1b; bca-miR1d; bch-miR1b; bci-miR1b; bhi-miR1c; bpi-miR1c; car-miR1b; cas-miR1a; cau-miR1; cba-miR1d; cci-miR1d; cco-miR1b; cde-miR1c; cfe-miR1c; cga-miR1b; cid-miR1b; cit-miR1af; clo-miR1b; cma-miR1c; cmd-miR1af; cmi-miR1b; cmj-miR1b; cmo-miR1c; cof-miR1c; cor-miR1c; cph-miR1b; cri-miR1d; csm-miR1b; cso-miR1c; csp-miR1d; cst-miR1; csu-miR1e; cya-miR1b; das-miR1; dda-miR1; ehu-miR1c; eja-miR1b; epr-miR1b; esn-miR1c; est-miR1b; fmu-miR1d; fsu-miR1b; fth-miR1c; gel-miR1c; gja-miR1c; hcr-miR1ad; hof-miR1c; ija-miR1c; ili-miR1; ini-miR1b; kga-miR1b; lba-miR1b; lch-miR1b; lcr-miR1c; lgr-miR1d; ljc-miR1c; lji-miR1d; ljn-miR1; ljo-miR1; ljp-miR1d; lln-miR1b; llu-miR1d; mal-miR1b; nja-miR1c; nnu-miR1d; nsc-miR1c; nte-miR1b; ofi-miR1c; pas-miR1c; pav-miR1a; pch-miR1b; pcl-miR1b; pfr-miR1c; pgi-miR1c; pmu-miR1b; poe-miR1af; ppo-miR1b; ppr-miR1c; psu-miR1b; ptn-miR1; pvl-miR1c; rch-miR1c; run-miR1b; sad-miR1d; sar-miR1d; sba-miR1d; sch-miR1d; sdf-miR1d; sdi-miR1d; sgi-miR1b; sln-miR1b; sor-miR1af; spa-miR1d; spo-miR1e; ssa-miR1; sse-miR1c; tan-miR1a; tch-miR1ae; tci-miR1c; tfa-miR1d; tja-miR1b; tki-miR1d; twi-miR1b; vph-miR1c; vtr-miR1d; xst-miR1; zof-miR1d;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0037   20.8   0.0  cm       49       70 ~~           1          22 + ~~ 1.00 5'&3' 0.27
                                                              ??? ??????????????????      NC
                                                        ~~~~~~>>>->>>>>>>>>>>>>>>>>>~~~~~ CS
                                               mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuag*[7]> 77
                                                              UGGAAUGUAAAGAAGUAUGUA
                                           zof-miR1d  1 <[ 0]*UGGAAUGUAAAGAAGUAUGUAU*[0]> 22
                                                        ......**********************..... PP

Targets

Predicted by TargetFinder

NM_001143957 ;   NM_001163391 ;   NM_001368124 ;   NM_005562 ;   NM_016255 ;   NM_030784 ;   NR_103535 ;  

Predicted by TAPIR

NM_005562 ;   NM_016255 ;   NR_103535 ;