The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. Bbj-miR159a

Accession: B71130214

Entry

ID: Bbj-miR159a
Alias: F14.K000011.A25
Sequence: UUUGGAUUGAAGGGAGCUCC
Description: microRNA MIR159 predicted
Species: 荜茄  Species latin name: -
TCM Name:
TCM Resource (Sample number): 荜茄(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bbj-miR159a; Bjl-miR159b; Bsr-miR159b; aan-miR159b; aar-miR159a; abi-miR159b; acn-miR159a; acr-miR159b; aha-miR159b; ala-miR159b; apl-miR159ab; ath-miR159a; ave-miR159b; bca-miR159b; bja-miR159b; bmj-miR159b; cco-miR159ab; ccs-miR159ab; clo-miR159a; cmd-miR159a; cmo-miR159b; cof-miR159b; cpe-miR159a; cpi-miR159b; csm-miR159b; cso-miR159b; csp-miR159ab; csu-miR159b; dst-miR159b; dsu-miR159; ehu-miR159b; eja-miR159b; epr-miR159b; esc-miR159a; est-miR159b; gbi-miR159b; gja-miR159b; gli-miR159a; gma-miR159ab; gmc-miR159b; gpe-miR159b; gsi-miR159b; hmu-miR159b; hof-miR159a; ija-miR159b; ini-miR159b; kga-miR159b; lfo-miR159b; ljc-miR159a; ljp-miR159a; llc-miR159b; lpu-miR159ab; mal-miR159b; mca-miR159ab; mch-miR159b; nca-miR159b; nja-miR159b; nnu-miR159ab; nsc-miR159b; nte-miR159b; pas-miR159d; pav-miR159ab; pcl-miR159b; pcn-miR159b; pfr-miR159b; pmu-miR159b; poe-miR159b; por-miR159ab; psu-miR159ab; pvl-miR159ab; rch-miR159ab; rcr-miR159ab; rja-miR159ab; rte-miR159b; sbc-miR159b; sch-miR159a; sdi-miR159a; sgl-miR159b; smi-miR159ab; smn-miR159a; sor-miR159b; spo-miR159b; ssu-miR159b; sto-miR159ab; tch-miR159a; tci-miR159b; twi-miR159b; vof-miR159b; vum-miR159b; zof-miR159a;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0013   19.6   0.0  cm      164      183 ~~           1          20 + ~~ 1.00 5'&3' 0.50
                                                                 ???????  ????????        NC
                                                        ~~~~~~~-->>>>>>>-->>>>>>>>:~~~~~~ CS
                                             MIR159   1 <[163]*uUUGGAcuGAAGGGAGCUCC*[13]> 196
                                                               UUUGGA UGAAGGGAGCUCC
                                        zof-miR159a   1 <[  0]*UUUGGAUUGAAGGGAGCUCC*[ 0]> 20
                                                        .......********************...... PP

Targets

Predicted by TargetFinder

NM_001167671 ;   NM_001167672 ;   NM_001170331 ;   NM_001171740 ;   NM_001171741 ;   NM_001195272 ;   NM_001242412 ;   NM_001267556 ;   NM_001267558 ;   NM_001267559 ;   NM_001271634 ;   NM_001300860 ;   NM_001370182 ;   NM_001370183 ;   NM_001370184 ;   NM_001370185 ;   NM_001370186 ;   NM_005444 ;   NM_005445 ;   NM_005544 ;   NM_005578 ;   NM_006456 ;   NM_013232 ;   NM_014829 ;   NM_014906 ;   NM_016210 ;   NM_020731 ;   NM_031912 ;   NM_138694 ;   NM_170724 ;   NM_181519 ;   NM_198511 ;   NR_003713 ;   NR_048561 ;   NR_073390 ;   NR_125341 ;   NR_134315 ;  

Predicted by TAPIR

NM_001170331 ;   NM_001171740 ;   NM_001171741 ;   NM_001174071 ;   NM_001174072 ;   NM_001242412 ;   NM_001267556 ;   NM_001267558 ;   NM_001267559 ;   NM_001271634 ;   NM_001300860 ;   NM_001362843 ;   NM_001370182 ;   NM_001370183 ;   NM_001370184 ;   NM_001370185 ;   NM_001370186 ;   NM_001429 ;   NM_005444 ;   NM_013232 ;   NM_014829 ;   NM_016210 ;   NM_020731 ;   NM_031912 ;   NM_138694 ;   NM_170724 ;   NM_178276 ;   NM_181519 ;   NM_198511 ;   NR_003713 ;   NR_073390 ;   NR_125341 ;   NR_126060 ;   NR_126061 ;   NR_132988 ;   NR_144470 ;   NR_146089 ;