The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. zof-miR1k

Accession: B70664777

Entry

ID: zof-miR1k
Alias: F574.N000219.A11
Sequence: UGGAAUGUAAAGAAGUAUGGAGA
Description: mir-1 microRNA precursor family predicted,partially
Species: 姜  Species latin name: Zingiber officinale
TCM Name: Ganjiang(干姜)   Paojiang(炮姜)   Shengjiang(生姜)  
TCM Resource (Sample number): 干姜(1) 炮姜(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR1i; acr-miR1h; bca-miR1h; cci-miR1h; cfe-miR1j; cma-miR1e; cof-miR1i; hvu-miR1c; lfo-miR1c; lji-miR1g; poe-miR1ar; rch-miR1d; sdi-miR1f; tch-miR1al; tfa-miR1g; tmo-miR1c; zof-miR1k;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     0.006   20.1   0.0  cm       49       70 ~.           1          22 + ~. 1.00    5' 0.36
                              ??? ?????????????????? NC
                        ~~~~~~>>>->>>>>>>>>>>>>>>>>> CS
               mir-1  8 <[41]*UGGAAUgUAAaGAAGuAUGuag 70
                              UGGAAUGUAAAGAAGUAUG AG
           zof-miR1k  1 <[ 0]*UGGAAUGUAAAGAAGUAUGGAG 22
                        ......********************** PP

Targets

Predicted by TargetFinder

NM_001080412 ;   NM_001145373 ;   NM_001350099 ;   NM_001350100 ;   NM_021637 ;   NM_213589 ;   NR_146713 ;  

Predicted by TAPIR

NM_001080412 ;   NM_001350099 ;   NM_001350100 ;   NM_014586 ;   NM_021637 ;   NM_213589 ;   NR_146713 ;