The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. sgl-miR159q

Accession: B61625015

Entry

ID: sgl-miR159q
Alias: F31563.K000051.A25*
Sequence: UUUGGAUUGAAGGGAGCUCA
Description: microRNA MIR159 predicted
Species: 土茯苓  Species latin name: Smilax glabra
TCM Name: Tufuling(土茯苓)  
TCM Resource (Sample number): 土茯苓(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bsr-miR159l; aar-miR159d; abi-miR159g; acr-miR159j; aha-miR159w; ala-miR159p; apl-miR159bv; ath-miR159f; ave-miR159r; bca-miR159p; bmj-miR159r; ccm-miR159e; cco-miR159bs; ccs-miR159bg; cmo-miR159o; cof-miR159s; cpe-miR159e; cpi-miR159j; cso-miR159q; csp-miR159aq; dst-miR159u; ehu-miR159l; epr-miR159h; est-miR159p; gbi-miR159v; gli-miR159d; gma-miR159bf; gmc-miR159n; gsi-miR159k; hmu-miR159g; hof-miR159k; ini-miR159p; lfo-miR159q; llc-miR159o; lpu-miR159cm; mca-miR159ax; nnu-miR159bj; nte-miR159k; pas-miR159b; pav-miR159bb; pca-miR159b; pcl-miR159i; pcn-miR159n; pfr-miR159r; pmu-miR159h; por-miR159bp; psu-miR159ay; rch-miR159az; rcr-miR159bg; rja-miR159bd; rte-miR159h; sbc-miR159l; sgl-miR159q; smi-miR159ax; ssu-miR159m; sto-miR159bb; tci-miR159l; vof-miR159k; vum-miR159p;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0025   18.4   0.0  cm      164      182 ~.           1          19 + ~. 1.00    5' 0.47
                                                                    ???????  ???????? NC
                                                           ~~~~~~~-->>>>>>>-->>>>>>>> CS
                                                MIR159  13 <[151]*uUUGGAcuGAAGGGAGCUC 182
                                                                  UUUGGA UGAAGGGAGCUC
                                           vum-miR159p   1 <[  0]*UUUGGAUUGAAGGGAGCUC 19
                                                           .......******************* PP

Targets

Predicted by TargetFinder

NM_000476 ;   NM_001024455 ;   NM_001195272 ;   NM_001271634 ;   NM_001318121 ;   NM_001318122 ;   NM_004686 ;   NM_005288 ;   NM_005444 ;   NM_005445 ;   NM_053002 ;   NM_138694 ;   NM_170724 ;   NR_073390 ;   NR_134315 ;   NR_135572 ;  

Predicted by TAPIR

NM_000476 ;   NM_001024455 ;   NM_001195272 ;   NM_001256850 ;   NM_001267550 ;   NM_001271634 ;   NM_001318121 ;   NM_001318122 ;   NM_003319 ;   NM_004686 ;   NM_005444 ;   NM_005445 ;   NM_006456 ;   NM_007361 ;   NM_053002 ;   NM_054107 ;   NM_133378 ;   NM_133432 ;   NM_133437 ;   NM_138694 ;   NM_170724 ;   NR_073390 ;   NR_134315 ;   NR_146089 ;