The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. sgl-miR159i

Accession: B61231442

Entry

ID: sgl-miR159i
Alias: F30.L000021.A25
Sequence: UUGGACUGAAGGGAGCUCCCC
Description: microRNA MIR159 predicted
Species: 土茯苓  Species latin name: Smilax glabra
TCM Name: Tufuling(土茯苓)  
TCM Resource (Sample number): 土茯苓(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

aan-miR159g; ala-miR159j; aof-miR159c; apl-miR159an; bmj-miR159g; cco-miR159aj; ccs-miR159ai; cmo-miR159h; est-miR159i; hcr-miR159g; hof-miR159f; mca-miR159ah; nnu-miR159ak; pav-miR159ak; pfr-miR159h; pvl-miR159ai; rcr-miR159aj; rja-miR159al; sbc-miR159g; sgl-miR159i; smi-miR159ai; tmo-miR159f; twi-miR159h; zof-miR159e;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0012   19.7   0.0  cm      165      185 ~~           1          21 + ~~ 1.00 5'&3' 0.62
                                                                  ???????  ????????          NC
                                                          ~~~~~~~->>>>>>>-->>>>>>>>:::~~~~~~ CS
                                               MIR159   1 <[164]*UUGGAcuGAAGGGAGCUCCuu*[11]> 196
                                                                 UUGGACUGAAGGGAGCUCC++
                                          zof-miR159e   1 <[  0]*UUGGACUGAAGGGAGCUCCCC*[ 0]> 21
                                                          .......*********************...... PP

Targets

Predicted by TargetFinder

NM_001286191 ;   NM_001286192 ;   NM_001286195 ;   NM_001286196 ;   NM_001286197 ;   NM_001286198 ;   NM_003076 ;   NM_022895 ;   NM_033208 ;   NM_139071 ;   NR_104409 ;  

Predicted by TAPIR

NM_003076 ;   NM_033208 ;   NM_139071 ;