The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. sca-miR159a

Accession: B60013738

Entry

ID: sca-miR159a
Alias: F9005.I000001.A25*
Sequence: UUUGGAUUGAAGGGAGCU
Description: microRNA MIR159 predicted
Species: 儿茶  Species latin name: Senegalia catechu
TCM Name: Ercha(儿茶)  
TCM Resource (Sample number): 儿茶(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bbj-miR159c; Bjl-miR159k; Bsr-miR159h; aan-miR159j; abi-miR159f; acr-miR159h; acs-miR159c; aha-miR159n; ala-miR159n; aof-miR159e; aox-miR159d; apl-miR159bd; ave-miR159m; bca-miR159m; bch-miR159a; bmj-miR159n; ccm-miR159d; cco-miR159bd; ccs-miR159au; cit-miR159i; cmd-miR159j; cmo-miR159j; cof-miR159l; cpi-miR159i; csm-miR159h; cso-miR159j; csp-miR159al; csu-miR159h; dst-miR159p; ehu-miR159j; eja-miR159g; epr-miR159g; est-miR159m; fmu-miR159e; fsu-miR159f; gbi-miR159j; gma-miR159au; gmc-miR159m; gpe-miR159h; gsi-miR159g; hcr-miR159i; hmu-miR159f; hof-miR159j; ija-miR159f; ili-miR159f; ini-miR159k; lfo-miR159j; ljn-miR159f; ljp-miR159d; llc-miR159l; llu-miR159b; lpu-miR159bm; mal-miR159e; mca-miR159as; mda-miR159c; nca-miR159g; nja-miR159e; nnu-miR159ax; nsc-miR159g; nte-miR159h; ofi-miR159b; pas-miR159a; pav-miR159at; pcl-miR159h; pcn-miR159k; pfr-miR159m; pmu-miR159f; poe-miR159h; por-miR159ba; psu-miR159ap; pvl-miR159ao; rch-miR159am; rcr-miR159aw; rja-miR159aw; rte-miR159f; sad-miR159c; sar-miR159f; sba-miR159f; sbc-miR159k; sca-miR159a; sch-miR159i; smi-miR159ar; sor-miR159f; sto-miR159ar; tci-miR159i; twi-miR159l; vof-miR159h; vum-miR159l;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0069   16.5   0.0  cm      164      181 ~~           1          18 + ~~ 1.00 5'&3' 0.44
                                                                     ???????  ???????       NC
                                                            ~~~~~~~-->>>>>>>-->>>>>>>~~~~~~ CS
                                                 MIR159   1 <[163]*uUUGGAcuGAAGGGAGCU*[15]> 196
                                                                   UUUGGA UGAAGGGAGCU
                                            vum-miR159l   1 <[  0]*UUUGGAUUGAAGGGAGCU*[ 0]> 18
                                                            .......******************...... PP

Targets

Predicted by TargetFinder

NM_000476 ;   NM_000506 ;   NM_001001659 ;   NM_001024455 ;   NM_001031684 ;   NM_001047160 ;   NM_001077484 ;   NM_001080383 ;   NM_001080534 ;   NM_001113490 ;   NM_001164766 ;   NM_001167671 ;   NM_001167672 ;   NM_001170331 ;   NM_001170629 ;   NM_001171109 ;   NM_001171110 ;   NM_001171111 ;   NM_001171740 ;   NM_001171741 ;   NM_001195272 ;   NM_001195446 ;   NM_001198595 ;   NM_001199633 ;   NM_001243077 ;   NM_001243078 ;   NM_001249 ;   NM_001267798 ;   NM_001271634 ;   NM_001278387 ;   NM_001278388 ;   NM_001278389 ;   NM_001278390 ;   NM_001282168 ;   NM_001282169 ;   NM_001284206 ;   NM_001284207 ;   NM_001284395 ;   NM_001288824 ;   NM_001288825 ;   NM_001288826 ;   NM_001288827 ;   NM_001288828 ;   NM_001300860 ;   NM_001301212 ;   NM_001304349 ;   NM_001308142 ;   NM_001308220 ;   NM_001311257 ;   NM_001317222 ;   NM_001317224 ;   NM_001318121 ;   NM_001318122 ;   NM_001320652 ;   NM_001320800 ;   NM_001321985 ;   NM_001321986 ;   NM_001321987 ;   NM_001321988 ;   NM_001329919 ;   NM_001350233 ;   NM_001351444 ;   NM_001354682 ;   NM_001354684 ;   NM_001354685 ;   NM_001354686 ;   NM_001363802 ;   NM_001365411 ;   NM_001365412 ;   NM_001365413 ;   NM_001365414 ;   NM_001367774 ;   NM_001368133 ;   NM_001370182 ;   NM_001370183 ;   NM_001370184 ;   NM_001370185 ;   NM_001370186 ;   NM_001553 ;   NM_001763 ;   NM_002730 ;   NM_002740 ;   NM_003559 ;   NM_003861 ;   NM_004686 ;   NM_005185 ;   NM_005260 ;   NM_005370 ;   NM_005444 ;   NM_005445 ;   NM_005497 ;   NM_005544 ;   NM_005578 ;   NM_005863 ;   NM_006139 ;   NM_006456 ;   NM_006727 ;   NM_006873 ;   NM_006885 ;   NM_006977 ;   NM_007170 ;   NM_007361 ;   NM_014048 ;   NM_014829 ;   NM_014906 ;   NM_014954 ;   NM_015021 ;   NM_015473 ;   NM_016075 ;   NM_016210 ;   NM_017553 ;   NM_017672 ;   NM_018380 ;   NM_018843 ;   NM_020212 ;   NM_020920 ;   NM_022127 ;   NM_024546 ;   NM_025057 ;   NM_030674 ;   NM_031216 ;   NM_031889 ;   NM_031912 ;   NM_032505 ;   NM_033266 ;   NM_033400 ;   NM_054107 ;   NM_133265 ;   NM_138694 ;   NM_152544 ;   NM_153267 ;   NM_170724 ;   NM_173698 ;   NM_181519 ;   NM_198279 ;   NM_198511 ;   NM_207518 ;   NR_002208 ;   NR_002227 ;   NR_003950 ;   NR_027418 ;   NR_037638 ;   NR_038320 ;   NR_038332 ;   NR_048561 ;   NR_073040 ;   NR_073390 ;   NR_104038 ;   NR_104261 ;   NR_120611 ;   NR_125341 ;   NR_125850 ;   NR_134315 ;   NR_135572 ;   NR_138467 ;   NR_138468 ;   NR_146089 ;   NR_147896 ;   NR_149152 ;   NR_149153 ;   NR_149154 ;  

Predicted by TAPIR

NM_000291 ;   NM_000369 ;   NM_000476 ;   NM_001001659 ;   NM_001008493 ;   NM_001012761 ;   NM_001018036 ;   NM_001024455 ;   NM_001025356 ;   NM_001047160 ;   NM_001079692 ;   NM_001080534 ;   NM_001135109 ;   NM_001142626 ;   NM_001142678 ;   NM_001142679 ;   NM_001164766 ;   NM_001170331 ;   NM_001170629 ;   NM_001171109 ;   NM_001171110 ;   NM_001171111 ;   NM_001171740 ;   NM_001171741 ;   NM_001174071 ;   NM_001174072 ;   NM_001195272 ;   NM_001197323 ;   NM_001198595 ;   NM_001204803 ;   NM_001206671 ;   NM_001206672 ;   NM_001243077 ;   NM_001243078 ;   NM_001249 ;   NM_001256850 ;   NM_001257069 ;   NM_001261827 ;   NM_001261828 ;   NM_001267550 ;   NM_001267798 ;   NM_001271634 ;   NM_001282168 ;   NM_001282169 ;   NM_001284206 ;   NM_001284207 ;   NM_001288824 ;   NM_001288825 ;   NM_001288826 ;   NM_001288827 ;   NM_001288828 ;   NM_001292018 ;   NM_001292019 ;   NM_001300860 ;   NM_001301212 ;   NM_001304349 ;   NM_001304548 ;   NM_001307943 ;   NM_001307960 ;   NM_001308026 ;   NM_001308142 ;   NM_001311257 ;   NM_001317222 ;   NM_001317224 ;   NM_001318121 ;   NM_001318122 ;   NM_001320652 ;   NM_001321985 ;   NM_001321986 ;   NM_001321987 ;   NM_001321988 ;   NM_001329919 ;   NM_001346690 ;   NM_001346691 ;   NM_001346692 ;   NM_001346693 ;   NM_001346694 ;   NM_001348424 ;   NM_001348425 ;   NM_001348426 ;   NM_001348427 ;   NM_001348428 ;   NM_001348429 ;   NM_001348430 ;   NM_001348431 ;   NM_001348432 ;   NM_001348433 ;   NM_001348434 ;   NM_001353980 ;   NM_001362843 ;   NM_001365037 ;   NM_001365038 ;   NM_001365039 ;   NM_001365040 ;   NM_001365041 ;   NM_001365411 ;   NM_001365412 ;   NM_001365413 ;   NM_001365414 ;   NM_001366508 ;   NM_001366509 ;   NM_001366510 ;   NM_001366511 ;   NM_001367774 ;   NM_001370182 ;   NM_001370183 ;   NM_001370184 ;   NM_001370185 ;   NM_001370186 ;   NM_001429 ;   NM_001522 ;   NM_001553 ;   NM_001763 ;   NM_002730 ;   NM_003297 ;   NM_003319 ;   NM_003609 ;   NM_003861 ;   NM_003967 ;   NM_004686 ;   NM_004762 ;   NM_005260 ;   NM_005370 ;   NM_005444 ;   NM_005445 ;   NM_005863 ;   NM_006139 ;   NM_006456 ;   NM_006727 ;   NM_006873 ;   NM_006885 ;   NM_007361 ;   NM_014048 ;   NM_014409 ;   NM_014829 ;   NM_014906 ;   NM_015004 ;   NM_015473 ;   NM_016075 ;   NM_016128 ;   NM_016210 ;   NM_017456 ;   NM_017672 ;   NM_018154 ;   NM_018259 ;   NM_018843 ;   NM_018847 ;   NM_020774 ;   NM_020920 ;   NM_021080 ;   NM_021964 ;   NM_022894 ;   NM_024546 ;   NM_024557 ;   NM_031216 ;   NM_031912 ;   NM_032597 ;   NM_033400 ;   NM_033632 ;   NM_054107 ;   NM_133378 ;   NM_133432 ;   NM_133437 ;   NM_138694 ;   NM_153447 ;   NM_170724 ;   NM_173698 ;   NM_178276 ;   NM_181519 ;   NM_198279 ;   NM_198511 ;   NM_207518 ;   NR_023353 ;   NR_027418 ;   NR_048561 ;   NR_049731 ;   NR_049732 ;   NR_049733 ;   NR_049734 ;   NR_073040 ;   NR_073390 ;   NR_102743 ;   NR_104261 ;   NR_120611 ;   NR_125341 ;   NR_126060 ;   NR_126061 ;   NR_132988 ;   NR_134315 ;   NR_135572 ;   NR_138467 ;   NR_138468 ;   NR_144484 ;   NR_144497 ;   NR_146089 ;   NR_147896 ;   NR_149152 ;   NR_149153 ;   NR_149154 ;