The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR181
  5. sca-miR181

Accession: B60013646

Entry

ID: sca-miR181
Alias: F8718.L000010.A25*
Sequence: AACAUUCAACGCUGUCGGUGA
Description: mir-181 microRNA precursor predicted,partially
Species: 儿茶  Species latin name: Senegalia catechu
TCM Name: Ercha(儿茶)  
TCM Resource (Sample number): 儿茶(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR181a; Bswzz-miR181a; bca-miR181a; bch-miR181a; bpi-miR181a; cba-miR181a; cde-miR181; cfe-miR181a; cit-miR181a; cmd-miR181a; cof-miR181a; csp-miR181a; fmu-miR181a; fsu-miR181a; hcr-miR181a; lba-miR181; lgr-miR181a; ljo-miR181a; llu-miR181a; mal-miR181; mpu-miR181a; pfr-miR181a; poe-miR181a; ppr-miR181a; pvl-miR181a; sbc-miR181a; sca-miR181; sch-miR181a; sgi-miR181a; sor-miR181a; tch-miR181a; tki-miR181a; vph-miR181a; zof-miR181a;

Rfam Alignments

>> mir-181  mir-181 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0031   19.7   0.0  cm        9       29 ~~           1          21 + ~~ 1.00 5'&3' 0.48
                                                               ?? ?????   ???????        NC
                                                        ~~~~~--<<-<<<<<---<<<<<<<-~~~~~~ CS
                                             mir-181  1 <[8]*AACAUUCAACGCUGUCGgUGA*[47]> 76
                                                             AACAUUCAACGCUGUCGGUGA
                                         zof-miR181a  1 <[0]*AACAUUCAACGCUGUCGGUGA*[ 0]> 21
                                                        .....*********************...... PP

Targets

Predicted by TargetFinder

NM_001278546 ;   NM_001371783 ;   NM_001489 ;   NM_033334 ;   NM_198461 ;  

Predicted by TAPIR

NM_001371783 ;   NM_198461 ;