The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR27
  5. sca-miR27a

Accession: B60009141

Entry

ID: sca-miR27a
Alias: F3421.L000022.A25
Sequence: UUCACAGUGGCUAAGUUCUGC
Description: microRNA mir-27 predicted
Species: 儿茶  Species latin name: Senegalia catechu
TCM Name: Ercha(儿茶)  
TCM Resource (Sample number): 儿茶(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR27a; Bswzz-miR27a; aar-miR27a; acr-miR27a; act-miR27; agr-miR27; asc-miR27a; bca-miR27a; bch-miR27a; bci-miR27; bhi-miR27a; bpi-miR27a; cas-miR27a; cba-miR27a; cci-miR27a; cfe-miR27a; cga-miR27; cid-miR27; cit-miR27af; cmd-miR27ab; cmi-miR27a; cmj-miR27; cmo-miR27; cof-miR27a; cri-miR27a; csp-miR27a; csu-miR27a; cya-miR27; dlo-miR27; ehu-miR27; eja-miR27a; epr-miR27a; esn-miR27a; est-miR27; fmu-miR27a; fsu-miR27a; fth-miR27; gel-miR27a; hcr-miR27ab; kga-miR27a; lba-miR27a; lch-miR27; lgr-miR27a; ljc-miR27a; lji-miR27a; ljn-miR27; ljo-miR27; ljp-miR27a; lln-miR27; llu-miR27a; mal-miR27; mda-miR27; nnu-miR27a; nte-miR27a; pcn-miR27; pfr-miR27a; pgi-miR27a; poe-miR27ac; ppr-miR27a; psu-miR27a; pvl-miR27a; sar-miR27a; sbc-miR27; sca-miR27a; sch-miR27a; sdf-miR27a; sdi-miR27a; sgi-miR27a; sln-miR27a; sor-miR27ac; spa-miR27; tch-miR27a; tfa-miR27a; tki-miR27a; tmo-miR27; vph-miR27a; vtr-miR27; zof-miR27a;

Rfam Alignments

>> mir-27  microRNA mir-27
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0006   21.7   0.0  cm       56       76 ~~           1          21 + ~~ 1.00 5'&3' 0.48
                                                                ?????  ???????????         NC
                                                          ~~~~~~>>>>>-->>>>>>>>>>>:::~~~~~ CS
                                                mir-27  1 <[55]*uUCACAGuGGCUAAGuuCuGC*[7]> 83
                                                                UUCACAGUGGCUAAGUUCUGC
                                            zof-miR27a  1 <[ 0]*UUCACAGUGGCUAAGUUCUGC*[0]> 21
                                                          ......*********************..... PP

Targets

Predicted by TargetFinder

NM_001002266 ;   NM_001131019 ;   NM_001242376 ;   NM_001282866 ;   NM_001363846 ;   NM_002055 ;   NM_021916 ;   NM_022055 ;   NM_145021 ;   NR_104614 ;   NR_104615 ;   NR_104664 ;   NR_164112 ;  

Predicted by TAPIR

NM_001002266 ;   NM_001005291 ;   NM_001131019 ;   NM_001134337 ;   NM_001134338 ;   NM_001242376 ;   NM_001278631 ;   NM_001282866 ;   NM_001321096 ;   NM_001321749 ;   NM_001349200 ;   NM_001349201 ;   NM_001351019 ;   NM_001363846 ;   NM_002010 ;   NM_002055 ;   NM_004176 ;   NM_005828 ;   NM_007219 ;   NM_017545 ;   NM_021916 ;   NM_182973 ;   NR_104614 ;   NR_104615 ;   NR_164112 ;