The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR133
  5. pgi-miR133a

Accession: B53263618

Entry

ID: pgi-miR133a
Alias: F1236.M000019.A25*
Sequence: UUGGUCCCCUUCAACCAGCUGU
Description: mir-133 microRNA precursor family predicted,partially
Species: 人参  Species latin name: Panax ginseng
TCM Name: Renshen(人参)   Renshenye(人参叶)   Hongshen(红参)  
TCM Resource (Sample number): 人参叶(1) 红参(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR133a; Bswzz-miR133c; aar-miR133a; acr-miR133c; act-miR133; agr-miR133; asc-miR133e; bca-miR133c; bpi-miR133ak; car-miR133a; cba-miR133; cci-miR133d; cde-miR133a; cfe-miR133f; cid-miR133; cit-miR133al; cmd-miR133ai; cmi-miR133g; cmj-miR133b; cof-miR133c; cph-miR133a; cri-miR133a; cso-miR133; csp-miR133c; csu-miR133d; ehu-miR133a; eja-miR133a; epr-miR133b; esn-miR133b; fmu-miR133c; fsu-miR133b; gel-miR133b; gja-miR133a; hcr-miR133ao; hof-miR133a; ili-miR133b; lch-miR133; lcr-miR133b; lgr-miR133c; ljc-miR133c; lji-miR133a; ljp-miR133d; llu-miR133a; mal-miR133a; nnu-miR133b; nte-miR133a; pas-miR133; pfr-miR133; pgi-miR133a; pmu-miR133; poe-miR133ah; ppr-miR133a; psu-miR133a; pvl-miR133d; rch-miR133; sad-miR133; sar-miR133a; sba-miR133a; sch-miR133d; sdf-miR133c; sgi-miR133a; sln-miR133b; sor-miR133an; tch-miR133ag; tfa-miR133a; tki-miR133a; zof-miR133g;

Rfam Alignments

>> mir-133  mir-133 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !     7e-05   23.9   0.0  cm       52       73 ~~           1          22 + ~~ 1.00 5'&3' 0.55
                                                              ?????     ?? ???????         NC
                                                        ~~~~~~>>>>>----->>->>>>>>>--~~~~~~ CS
                                             mir-133  1 <[51]*uUGGUCCCCUUCAACCAGCuGU*[14]> 87
                                                              UUGGUCCCCUUCAACCAGCUGU
                                         zof-miR133g  1 <[ 0]*UUGGUCCCCUUCAACCAGCUGU*[ 0]> 22
                                                        ......**********************...... PP

Targets

Predicted by TargetFinder

NM_001145153 ;   NM_001297669 ;   NM_001297670 ;   NM_001308394 ;   NM_001349316 ;   NM_001349319 ;   NM_001349320 ;   NM_001349321 ;   NM_001349322 ;   NM_001349323 ;   NM_001349324 ;   NM_001349325 ;   NM_001349326 ;   NM_001364885 ;   NM_003278 ;   NM_007037 ;   NM_012157 ;   NM_022744 ;   NM_025081 ;   NM_144649 ;   NR_146121 ;   NR_146122 ;   NR_146123 ;   NR_146124 ;   NR_146125 ;   NR_146126 ;   NR_146127 ;   NR_146128 ;   NR_146129 ;   NR_146130 ;   NR_146131 ;   NR_146132 ;   NR_146133 ;   NR_146134 ;   NR_146135 ;  

Predicted by TAPIR

NM_001145153 ;   NM_001308394 ;   NM_001349316 ;   NM_001349319 ;   NM_001349320 ;   NM_001349321 ;   NM_001349322 ;   NM_001349323 ;   NM_001349324 ;   NM_001349325 ;   NM_001349326 ;   NM_001364885 ;   NM_003278 ;   NM_004853 ;   NM_012157 ;   NM_022744 ;   NM_024791 ;   NM_025081 ;   NM_144649 ;   NR_146121 ;   NR_146122 ;   NR_146123 ;   NR_146124 ;   NR_146125 ;   NR_146126 ;   NR_146127 ;   NR_146128 ;   NR_146129 ;   NR_146130 ;   NR_146131 ;   NR_146132 ;   NR_146133 ;   NR_146134 ;   NR_146135 ;