The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. lin
  5. pfr-lin-4b

Accession: B52742958

Entry

ID: pfr-lin-4b
Alias: F3081.L000011.A25
Sequence: UCCCUGAGACCCUAACUUGUG
Description: lin-4 microRNA precursor predicted,partially
Species: 紫苏  Species latin name: Perilla frutescens
TCM Name: Zisuzi(紫苏子)   Zisuye(紫苏叶)   Zisugeng(紫苏梗)  
TCM Resource (Sample number): 紫苏子(1) 紫苏(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-lin-4b; Bswzz-lin-4a; aar-lin-4a; acr-lin-4a; asc-lin-4b; bca-lin-4b; bch-lin-4b; bhi-lin-4a; bpi-lin-4b; cas-lin-4a; cba-lin-4a; cci-lin-4a; cfe-lin-4b; cit-lin-4b; cmd-lin-4b; cof-lin-4b; csp-lin-4b; ehu-lin-4; epr-lin-4a; esn-lin-4b; fmu-lin-4b; fsu-lin-4b; gel-lin-4a; hcr-lin-4b; lba-lin-4b; ljc-lin-4; lji-lin-4; ljn-lin-4a; ljo-lin-4b; ljp-lin-4b; llu-lin-4a; mal-lin-4a; nnu-lin-4a; pfr-lin-4b; poe-lin-4b; ppr-lin-4a; psu-lin-4; pvl-lin-4b; rcr-lin-4a; sar-lin-4a; sba-lin-4a; sdf-lin-4b; sgi-lin-4b; sor-lin-4b; tch-lin-4a; tfa-lin-4a; tki-lin-4b; vph-lin-4b; zof-lin-4b;

Rfam Alignments

>> lin-4  lin-4 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0028   20.0   0.0  cm        7       27 ~~           1          21 + ~~ 1.00 5'&3' 0.52
                                                              ??? ???? ??? ???????       NC
                                                        ~~~~~-<<<-<<<<-<<<-<<<<<<<~~~~~~ CS
                                               lin-4  1 <[6]*UCCCUGAGACCccAAcuuGUG*[44]> 71
                                                             UCCCUGAGACCC AACUUGUG
                                          zof-lin-4b  1 <[0]*UCCCUGAGACCCUAACUUGUG*[ 0]> 21
                                                        .....*********************...... PP

Targets

Predicted by TargetFinder

NM_001005851 ;   NM_001079512 ;   NM_001257135 ;   NM_001318873 ;   NM_002309 ;   NM_006736 ;   NM_018196 ;   NR_103558 ;  

Predicted by TAPIR

NM_001005851 ;   NM_001040273 ;   NM_001079512 ;   NM_001100599 ;   NM_001122957 ;   NM_001136046 ;   NM_001139498 ;   NM_001139500 ;   NM_001139501 ;   NM_001139502 ;   NM_001267822 ;   NM_001271926 ;   NM_001288805 ;   NM_001288807 ;   NM_001288808 ;   NM_001288809 ;   NM_001318873 ;   NM_004114 ;   NM_005881 ;   NM_018196 ;   NM_032265 ;   NM_033642 ;   NM_173555 ;   NM_173831 ;   NR_073580 ;   NR_073581 ;   NR_073582 ;   NR_073591 ;   NR_073592 ;   NR_073593 ;   NR_073594 ;   NR_073595 ;   NR_103558 ;   NR_108100 ;   NR_110190 ;   NR_110191 ;   NR_110192 ;   NR_110193 ;   NR_148221 ;