The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. pfr-miR1d

Accession: B52549547

Entry

ID: pfr-miR1d
Alias: F574.M000082.A11
Sequence: UGGAAUGUAAAGAAGUAUGUAA
Description: mir-1 microRNA precursor family predicted,partially
Species: 紫苏  Species latin name: Perilla frutescens
TCM Name: Zisuzi(紫苏子)   Zisuye(紫苏叶)   Zisugeng(紫苏梗)  
TCM Resource (Sample number): 紫苏子(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR1e; Bswzz-miR1f; acr-miR1f; agr-miR1c; asc-miR1d; bca-miR1e; bhi-miR1d; bpi-miR1e; cba-miR1e; cci-miR1e; cfe-miR1e; cit-miR1ai; cma-miR1d; cmd-miR1ai; cmi-miR1c; cof-miR1e; csp-miR1f; csu-miR1f; epr-miR1c; esn-miR1d; fmu-miR1e; fsu-miR1c; gel-miR1d; hcr-miR1af; lch-miR1c; lcr-miR1d; lgr-miR1e; lji-miR1e; ljp-miR1e; lln-miR1c; llu-miR1f; mal-miR1c; nnu-miR1e; nte-miR1c; pfr-miR1d; pmu-miR1c; poe-miR1ai; ppr-miR1d; psu-miR1c; pvl-miR1e; sar-miR1e; sba-miR1e; sch-miR1f; sdf-miR1e; sgi-miR1c; sln-miR1c; sor-miR1ai; tch-miR1af; tfa-miR1e; tki-miR1f; twi-miR1c; vtr-miR1e; zof-miR1f;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0042   20.6   0.0  cm       49       69 ~.           1          21 + ~. 1.00    5' 0.29
                               ??? ????????????????? NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>>> CS
                mir-1  9 <[40]*UGGAAUgUAAaGAAGuAUGua 69
                               UGGAAUGUAAAGAAGUAUGUA
            zof-miR1f  1 <[ 0]*UGGAAUGUAAAGAAGUAUGUA 21
                         ......********************* PP

Targets

Predicted by TargetFinder

NM_001145373 ;   NM_001174156 ;   NM_001201477 ;   NM_005562 ;   NM_018092 ;   NM_144660 ;   NR_015436 ;   NR_146713 ;   NR_152235 ;   NR_152238 ;   NR_152239 ;   NR_152242 ;  

Predicted by TAPIR

NM_005562 ;   NR_015436 ;   NR_152235 ;   NR_152238 ;   NR_152239 ;   NR_152242 ;