The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. sca-miR159d

Accession: B59963134

Entry

ID: sca-miR159d
Alias: F14.L000025.A3D
Sequence: UUUGGAUUGAAGGGAGCUCUA
Description: MIR159 putative
Species: 儿茶  Species latin name: Senegalia catechu
TCM Name: Ercha(儿茶)  
TCM Resource (Sample number): 儿茶(1)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

ahy-miR159; aly-miR159a-3p; aof-miR159; ath-miR159a; atr-miR159; bna-miR159; bra-miR159a; cme-miR159a; cpa-miR159a; csi-miR159a-3p; fve-miR159a-3p; gma-miR159a-3p; gma-miR159e-3p; hbr-miR159a; htu-miR159a; mdm-miR159d; mdm-miR159e; mdm-miR159f; mes-miR159a-3p; mes-miR159b; mtr-miR159a; nta-miR159; ppe-miR159; ptc-miR159a; ptc-miR159b; pvu-miR159a.1; rco-miR159; sly-miR159; vca-miR159-3p; vvi-miR159c;

Bencao Homologs

Bjl-miR159d; Bsr-miR159e; Bswzz-miR159b; Btmz-miR159c; aan-miR159d; abi-miR159e; acs-miR159b; aha-miR159e; ala-miR159e; aof-miR159b; aox-miR159b; apa-miR159b; apl-miR159ae; asc-miR159b; ath-miR159d; ave-miR159e; bca-miR159d; bch-miR159f; bhi-miR159b; bja-miR159e; bmj-miR159e; bpi-miR159b; car-miR159b; cas-miR159b; cba-miR159b; ccm-miR159c; cco-miR159ae; ccs-miR159ae; cde-miR159b; cfe-miR159a; cid-miR159b; cit-miR159c; cmd-miR159c; cmi-miR159b; cmj-miR159c; cmn-miR159b; cmo-miR159e; cof-miR159d; cpe-miR159d; cpi-miR159e; cri-miR159b; csm-miR159d; cso-miR159e; csp-miR159ad; csu-miR159e; das-miR159; dst-miR159e; efo-miR159b; ehu-miR159d; eja-miR159e; epr-miR159d; esn-miR159a; est-miR159e; fmu-miR159c; fsu-miR159c; gbi-miR159e; gel-miR159b; gja-miR159d; gma-miR159ae; gmc-miR159e; gpe-miR159e; gsi-miR159e; gur-miR159b; hcr-miR159c; hmu-miR159e; hof-miR159d; ija-miR159e; ili-miR159c; lba-miR159b; lfo-miR159e; lgr-miR159b; ljc-miR159c; ljn-miR159c; ljo-miR159b; ljp-miR159c; llc-miR159e; lln-miR159b; lpu-miR159ae; lsn-miR159; mca-miR159ae; mda-miR159b; mpu-miR159a; nca-miR159e; nja-miR159d; nnu-miR159ae; nsc-miR159e; nte-miR159e; pas-miR159f; pav-miR159ae; pci-miR159b; pcl-miR159e; pcn-miR159e; pfr-miR159e; pgi-miR159c; pla-miR159c; pmu-miR159e; poe-miR159e; por-miR159ae; ppr-miR159b; psu-miR159ae; ptn-miR159b; pvl-miR159ae; rch-miR159ae; rcr-miR159ae; rja-miR159ae; rte-miR159e; sad-miR159b; sar-miR159c; sba-miR159c; sbc-miR159d; sca-miR159d; sch-miR159c; sdi-miR159c; sgi-miR159; sgl-miR159e; sln-miR159; smi-miR159ae; smn-miR159d; sor-miR159d; spo-miR159d; ssa-miR159b; sse-miR159b; ssu-miR159d; sto-miR159ae; tch-miR159b; tci-miR159d; tki-miR159b; tmo-miR159c; twi-miR159e; vof-miR159e; vph-miR159a; vum-miR159e; zof-miR159c;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0021   18.8   0.0  cm      164      183 ~.           1          20 + ~. 1.00    5' 0.45
                                                                     ???????  ????????  NC
                                                            ~~~~~~~-->>>>>>>-->>>>>>>>: CS
                                                 MIR159  13 <[151]*uUUGGAcuGAAGGGAGCUCC 183
                                                                   UUUGGA UGAAGGGAGCUC+
                                            zof-miR159c   1 <[  0]*UUUGGAUUGAAGGGAGCUCU 20
                                                            .......******************** PP

Targets

Predicted by TargetFinder

NM_001195272 ;   NM_001271634 ;   NM_005444 ;   NM_138694 ;   NM_170724 ;   NR_073390 ;   NR_135572 ;  

Predicted by TAPIR

NM_001195272 ;   NM_001271634 ;   NM_005444 ;   NM_005445 ;   NM_138694 ;   NM_170724 ;   NR_073390 ;