The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. sar-miR1s

Accession: B59088540

Entry

ID: sar-miR1s
Alias: F50649.M000009.A11
Sequence: UGGAAUGUAAGGAAGUGUGUGU
Description: mir-1 microRNA precursor family predicted,partially
Species: 丁香蒲桃  Species latin name: Syzygium aromaticum
TCM Name:
TCM Resource (Sample number): 母丁香(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

acr-miR1r; bca-miR1t; bpi-miR1q; cfe-miR1w; cmd-miR1bj; csp-miR1o; csu-miR1q; esn-miR1k; fsu-miR1k; gel-miR1o; hcr-miR1bf; poe-miR1bo; pvl-miR1q; sar-miR1s; sch-miR1s; sor-miR1bu; tch-miR1bd;

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0094   19.3   0.0  cm       49       70 ~~           1          22 + ~~ 1.00 5'&3' 0.41
                               ??? ??????????????????      NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>>>>~~~~~ CS
                mir-1  1 <[48]*UGGAAUgUAAaGAAGuAUGuag*[7]> 77
                               UGGAAUGUAA GAAGU UGU
           tch-miR1bd  1 <[ 0]*UGGAAUGUAAGGAAGUGUGUGU*[0]> 22
                         ......**********************..... PP

Targets

Predicted by TargetFinder

NM_001112800 ;   NM_001112801 ;   NM_001112802 ;   NM_001252624 ;   NM_001351483 ;   NM_001351484 ;   NM_001351485 ;   NM_001351486 ;   NM_001351487 ;   NM_001351488 ;   NM_001351489 ;   NM_001351490 ;   NM_001351491 ;   NM_001351492 ;   NM_001351493 ;   NM_001351494 ;   NM_001372263 ;   NM_021097 ;   NM_153442 ;  

Predicted by TAPIR

NM_001290224 ;   NM_006710 ;   NM_199259 ;   NM_199260 ;   NM_199261 ;