The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR10
  5. ppr-miR10j

Accession: B55131643

Entry

ID: ppr-miR10j
Alias: F10989.M000047.A25
Sequence: AACCCGUAGAUCCGAACUUGUG
Description: mir-10 microRNA precursor family predicted,partially
Species: 前胡  Species latin name: Peucedanum praeruptorum
TCM Name: Qianhu(前胡)  
TCM Resource (Sample number): 前胡(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR10al; Bswzz-miR10c; abs-miR10a; acr-miR10d; act-miR10c; ade-miR10; aeu-miR10a; aox-miR10a; asc-miR10e; bca-miR10i; bch-miR10g; bci-miR10b; bhi-miR10d; bpi-miR10e; car-miR10c; cba-miR10f; cci-miR10e; cfe-miR10aj; cit-miR10ap; cmd-miR10ak; cmj-miR10a; cmo-miR10b; cof-miR10e; cor-miR10a; cri-miR10c; csp-miR10h; csu-miR10c; cya-miR10b; ehu-miR10c; eja-miR10b; epr-miR10c; esn-miR10i; fmu-miR10e; fsu-miR10g; fth-miR10a; gel-miR10g; gmc-miR10a; hcr-miR10j; hof-miR10a; kga-miR10d; lba-miR10c; lch-miR10b; ljc-miR10d; ljo-miR10c; ljp-miR10d; llu-miR10d; mal-miR10b; nja-miR10a; nnu-miR10b; nsc-miR10a; pch-miR10a; pci-miR10a; pcl-miR10a; pfr-miR10d; pgi-miR10a; poe-miR10al; ppr-miR10j; pvl-miR10i; rcd-miR10a; rcr-miR10; rte-miR10a; run-miR10c; sad-miR10c; sar-miR10c; sba-miR10a; sch-miR10c; sdf-miR10d; sgi-miR10j; sln-miR10b; smi-miR10; sor-miR10ao; spa-miR10; ssa-miR10b; ssu-miR10b; ste-miR10; tch-miR10c; tfa-miR10c; tki-miR10l; tmo-miR10f; zof-miR10g;

Rfam Alignments

>> mir-10  mir-10 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0013   19.8   0.0  cm        8       30 ~~           1          22 + ~~ 1.00 5'&3' 0.50
                                                              ???   ???????????????       NC
                                                       ~~~~~--<<<---<<<<<<<<<<<<<<<~~~~~~ CS
                                             mir-10  1 <[7]*UACCCUGUAGAucCGAacuUGUG*[45]> 75
                                                            +ACCC GUAGAUCCGAACUUGUG
                                         zof-miR10g  1 <[0]*AACCC-GUAGAUCCGAACUUGUG*[ 0]> 22
                                                       .....*****.*****************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR