The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. lin
  5. poe-lin-4h

Accession: B54066934

Entry

ID: poe-lin-4h
Alias: F3081.N000039.A11
Sequence: UCCCUGAGACCCUAACUUGUGGG
Description: lin-4 microRNA precursor predicted,partially
Species: 马齿苋  Species latin name: Portulaca oleracea
TCM Name: Machixian(马齿苋)  
TCM Resource (Sample number): 马齿苋(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

None

Rfam Alignments

>> lin-4  lin-4 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0021   20.5   0.0  cm        7       29 ~~           1          23 + ~~ 1.00 5'&3' 0.57
                               ??? ???? ??? ????????        NC
                         ~~~~~-<<<-<<<<-<<<-<<<<<<<<_~~~~~~ CS
                lin-4  1 <[6]*UCCCUGAGACCccAAcuuGUGAg*[42]> 71
                              UCCCUGAGACCC AACUUGUG G
           poe-lin-4h  1 <[0]*UCCCUGAGACCCUAACUUGUGGG*[ 0]> 23
                         .....***********************...... PP

Targets

Predicted by TargetFinder

NM_001257135 ;   NM_002309 ;   NM_018196 ;  

Predicted by TAPIR

NM_001040273 ;   NM_018196 ;   NM_173555 ;   NR_073580 ;   NR_073581 ;   NR_073582 ;   NR_073591 ;   NR_073592 ;   NR_073593 ;   NR_073594 ;   NR_073595 ;   NR_108100 ;