The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR171
  5. hcr-miR171a

Accession: B35593330

Entry

ID: hcr-miR171a
Alias: F10.L000003.A3D
Sequence: UGAUUGAGCCGUGCCAAUAUC
Description: MIR171 putative
Species: 蕺菜  Species latin name: Houttuynia cordata
TCM Name: Yuxingcao(鱼腥草)  
TCM Resource (Sample number): 鱼腥草(2)
Predicted by Mirnovo: -
Evidence support: Mirbase|infernal
Experimental status: Not yet

Homologs

miRBase Homologs

aof-miR171a; aqc-miR171a; aqc-miR171b; aqc-miR171d; ata-miR171b-3p; ata-miR171d-3p; bdi-miR171b; bdi-miR171c-3p; bdi-miR171d-3p; bdi-miR171e; cme-miR171c; cme-miR171f; cpa-miR171a; cpa-miR171b; cpa-miR171c; cpa-miR171d; crt-miR171; csi-miR171c-3p; csi-miR171d-3p; csi-miR171f-3p; csi-miR171h-3p; csi-miR171i-3p; far-miR171; fve-miR171a; fve-miR171c-3p; fve-miR171d; fve-miR171e; fve-miR171g; gma-miR171e; gma-miR171f; gma-miR171g; gma-miR171j-3p; gma-miR171u; hpa-miR171a; htu-miR171b; htu-miR171c; hvu-miR171-3p; lja-miR171a; lus-miR171b; lus-miR171c; lus-miR171e; mdm-miR171g; mdm-miR171h; mes-miR171g; mes-miR171h; mes-miR171i; mes-miR171j; mes-miR171k; mtr-miR171d; nta-miR171c; osa-miR171b; osa-miR171c-3p; osa-miR171d-3p; osa-miR171e-3p; osa-miR171f-3p; pde-miR171; ppe-miR171a; ppe-miR171c; ppe-miR171f; ppe-miR171g; ptc-miR171e; ptc-miR171f; ptc-miR171g-3p; ptc-miR171h-3p; ptc-miR171i; rco-miR171c; rco-miR171d; rco-miR171e; rco-miR171f; sbi-miR171a; sbi-miR171b; sbi-miR171d; sbi-miR171i; sbi-miR171k; sly-miR171a; stu-miR171a-3p; stu-miR171e; tae-miR171a; tcc-miR171d; tcc-miR171e; tcc-miR171f; tcc-miR171g; tcc-miR171h; vvi-miR171a; vvi-miR171c; vvi-miR171d; vvi-miR171i; vvi-miR171j; zma-miR171d-3p; zma-miR171e-3p; zma-miR171i-3p; zma-miR171j-3p;

Bencao Homologs

apl-miR171a; cco-miR171a; cmo-miR171; csu-miR171; gmc-miR171; hcr-miR171a; lfo-miR171a; lpu-miR171a; nnu-miR171a; por-miR171a; psu-miR171; pvl-miR171a; rch-miR171a; sor-miR171; sto-miR171a;

Rfam Alignments

>> MIR171_1  microRNA MIR171_1
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0028   22.4   0.0  cm       69       89 ~~           1          21 + ~~ 1.00 5'&3' 0.48
                                                              ?? ??????  ?????????       NC
                                                       ~~~~~~_>>->>>>>>-->>>>>>>>>~~~~~~ CS
                                           MIR171_1  1 <[68]*UGAUUGAGCCGUgCCAAuAUC*[12]> 101
                                                             UGAUUGAGCCGUGCCAAUAUC
                                        sto-miR171a  1 <[ 0]*UGAUUGAGCCGUGCCAAUAUC*[ 0]> 21
                                                       ......*********************...... PP

Targets

Predicted by TargetFinder


Predicted by TAPIR