The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR159
  5. gsi-miR159a

Accession: B34886533

Entry

ID: gsi-miR159a
Alias: F14.J000003.A25
Sequence: UUUGGAUUGAAGGGAGCUC
Description: microRNA MIR159 predicted
Species: 皂荚  Species latin name: Gleditsia sinensis
TCM Name: Dazaojiao(大皂角)   Zaojiaoci(皂角刺)   Zhuyazao(猪牙皂)  
TCM Resource (Sample number): 皂角刺(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

Bjl-miR159a; Bsr-miR159a; Btmz-miR159a; aan-miR159a; abi-miR159a; acr-miR159a; aha-miR159a; ala-miR159a; apl-miR159aa; ave-miR159a; bca-miR159a; bch-miR159d; bja-miR159a; bmj-miR159a; cco-miR159aa; ccs-miR159aa; cit-miR159a; cmo-miR159a; cof-miR159a; cor-miR159a; cpi-miR159a; csm-miR159a; cso-miR159a; csp-miR159aa; csu-miR159a; dst-miR159a; ehu-miR159a; eja-miR159a; epr-miR159a; est-miR159a; fmu-miR159a; fsu-miR159a; gbi-miR159a; gja-miR159a; gma-miR159aa; gmc-miR159a; gpe-miR159a; gsi-miR159a; hcr-miR159a; hmu-miR159a; ija-miR159a; ili-miR159a; ini-miR159a; kga-miR159a; lfo-miR159a; ljn-miR159a; llc-miR159a; lpu-miR159aa; mal-miR159a; mca-miR159aa; mch-miR159a; nca-miR159a; nja-miR159a; nnu-miR159aa; nsc-miR159a; nte-miR159a; pas-miR159c; pav-miR159aa; pcl-miR159a; pcn-miR159a; pfr-miR159a; pgi-miR159a; pla-miR159a; pmu-miR159a; poe-miR159a; por-miR159aa; psu-miR159aa; pvl-miR159aa; rch-miR159aa; rcr-miR159aa; rja-miR159aa; rte-miR159a; sar-miR159a; sba-miR159a; sbc-miR159a; sca-miR159b; sgl-miR159a; smi-miR159aa; sor-miR159a; spo-miR159a; ssu-miR159a; sto-miR159aa; tci-miR159a; tmo-miR159a; twi-miR159a; vof-miR159a; vum-miR159a; zmu-miR159a;

Rfam Alignments

>> MIR159  microRNA MIR159
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0024   18.4   0.0  cm      164      182 ~~           1          19 + ~~ 1.00 5'&3' 0.47
                                                                   ???????  ????????       NC
                                                          ~~~~~~~-->>>>>>>-->>>>>>>>~~~~~~ CS
                                               MIR159   1 <[163]*uUUGGAcuGAAGGGAGCUC*[14]> 196
                                                                 UUUGGA UGAAGGGAGCUC
                                          zmu-miR159a   1 <[  0]*UUUGGAUUGAAGGGAGCUC*[ 0]> 19
                                                          .......*******************...... PP

Targets

Predicted by TargetFinder

NM_000476 ;   NM_000506 ;   NM_001024455 ;   NM_001031684 ;   NM_001047160 ;   NM_001079516 ;   NM_001080534 ;   NM_001113490 ;   NM_001143974 ;   NM_001167671 ;   NM_001167672 ;   NM_001170331 ;   NM_001171740 ;   NM_001171741 ;   NM_001195272 ;   NM_001195446 ;   NM_001271634 ;   NM_001288824 ;   NM_001288825 ;   NM_001288826 ;   NM_001288827 ;   NM_001288828 ;   NM_001300860 ;   NM_001308220 ;   NM_001311257 ;   NM_001318121 ;   NM_001318122 ;   NM_001321957 ;   NM_001321958 ;   NM_001321959 ;   NM_001321960 ;   NM_001329919 ;   NM_001351444 ;   NM_001363802 ;   NM_001368133 ;   NM_001370182 ;   NM_001370183 ;   NM_001370184 ;   NM_001370185 ;   NM_001370186 ;   NM_004686 ;   NM_005185 ;   NM_005260 ;   NM_005288 ;   NM_005444 ;   NM_005445 ;   NM_005578 ;   NM_005863 ;   NM_006456 ;   NM_014829 ;   NM_014906 ;   NM_015021 ;   NM_016210 ;   NM_019893 ;   NM_031889 ;   NM_031912 ;   NM_033266 ;   NM_053002 ;   NM_133265 ;   NM_138694 ;   NM_170724 ;   NM_181519 ;   NM_198511 ;   NR_003950 ;   NR_048561 ;   NR_073040 ;   NR_073390 ;   NR_125341 ;   NR_134315 ;   NR_135572 ;   NR_135904 ;   NR_146089 ;  

Predicted by TAPIR

NM_000476 ;   NM_001024455 ;   NM_001047160 ;   NM_001080534 ;   NM_001170331 ;   NM_001170629 ;   NM_001171740 ;   NM_001171741 ;   NM_001174071 ;   NM_001174072 ;   NM_001195272 ;   NM_001256850 ;   NM_001267550 ;   NM_001271634 ;   NM_001288824 ;   NM_001288825 ;   NM_001288826 ;   NM_001288827 ;   NM_001288828 ;   NM_001318121 ;   NM_001318122 ;   NM_001329919 ;   NM_001362843 ;   NM_001429 ;   NM_003319 ;   NM_003967 ;   NM_004686 ;   NM_005185 ;   NM_005260 ;   NM_005444 ;   NM_005445 ;   NM_005863 ;   NM_006456 ;   NM_014906 ;   NM_016210 ;   NM_018259 ;   NM_020920 ;   NM_022894 ;   NM_133378 ;   NM_133432 ;   NM_133437 ;   NM_138694 ;   NM_170724 ;   NM_178276 ;   NM_198511 ;   NR_048561 ;   NR_073040 ;   NR_073390 ;   NR_126060 ;   NR_126061 ;   NR_132988 ;   NR_134315 ;   NR_135572 ;