The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. lin
  5. cof-lin-4e

Accession: B21689702

Entry

ID: cof-lin-4e
Alias: F18150.M000034.A25
Sequence: UCCCUGAGACCUAAACUUGUGA
Description: lin-4 microRNA precursor predicted,partially
Species: 山茱萸  Species latin name: Cornus officinalis
TCM Name: Shanzhuyu(山茱萸)  
TCM Resource (Sample number): 山茱萸(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

None

Rfam Alignments

>> lin-4  lin-4 microRNA precursor
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0063   18.8   0.0  cm        7       28 ~~           1          22 + ~~ 1.00 5'&3' 0.45
                                                                  ??? ???? ??? ????????       NC
                                                            ~~~~~-<<<-<<<<-<<<-<<<<<<<<~~~~~~ CS
                                                   lin-4  1 <[6]*UCCCUGAGACCccAAcuuGUGA*[43]> 71
                                                                 UCCCUGAGACC  AACUUGUGA
                                              cof-lin-4e  1 <[0]*UCCCUGAGACCUAAACUUGUGA*[ 0]> 22
                                                            .....**********************...... PP

Targets

Predicted by TargetFinder

NM_001282179 ;   NM_001282180 ;   NM_001351702 ;   NM_001354926 ;   NM_006246 ;   NM_178026 ;   NR_104104 ;  

Predicted by TAPIR

NM_001005851 ;   NM_001282179 ;   NM_001282180 ;   NM_001351702 ;   NM_001354926 ;   NM_006246 ;   NM_178026 ;   NR_034099 ;   NR_104104 ;