The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR1
  5. csp-miR1j

Accession: B25186961

Entry

ID: csp-miR1j
Alias: F574.N000259.A11
Sequence: UGGAAUGUAAAGAAGUAUGUAGG
Description: mir-1 microRNA precursor family predicted,partially
Species: 贴梗海棠  Species latin name: Chaenomeles speciosa
TCM Name: Mugua(木瓜)  
TCM Resource (Sample number): 木瓜(1)
Predicted by Mirnovo: -
Evidence support: Infernal
Experimental status: Not yet

Homologs

miRBase Homologs

None

Bencao Homologs

None

Rfam Alignments

>> mir-1  mir-1 microRNA precursor family
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) !    0.0035   21.0   0.0  cm       49       70 ~.           1          22 + ~. 1.00    5' 0.32
                               ??? ?????????????????? NC
                         ~~~~~~>>>->>>>>>>>>>>>>>>>>> CS
                mir-1  8 <[41]*UGGAAUgUAAaGAAGuAUGuag 70
                               UGGAAUGUAAAGAAGUAUGUAG
            csp-miR1j  1 <[ 0]*UGGAAUGUAAAGAAGUAUGUAG 22
                         ......********************** PP

Targets

Predicted by TargetFinder

NM_001145373 ;  

Predicted by TAPIR

NM_001166018 ;   NM_001370959 ;   NM_007252 ;