The Bencao (Herbal) Database（本草数据库）

  1. OmicsAtlas
  2. TranscriptomeAtlas
  3. miRNA Atlas
  4. miR164
  5. csp-miR164a

Accession: B25178833

Entry

ID: csp-miR164a
Alias: F510.L000090.A29*
Sequence: CACGUGUUCUCCUUCUCCAAC
Description: MIR164 putative
Species: 贴梗海棠  Species latin name: Chaenomeles speciosa
TCM Name: Mugua(木瓜)  
TCM Resource (Sample number): 木瓜(1)
Predicted by Mirnovo: -
Evidence support: Mirbase
Experimental status: Not yet

Homologs

miRBase Homologs

sly-miR164b-3p;

Bencao Homologs

csp-miR164a; sbc-miR164b;

Rfam Alignments

>> MIR164  microRNA MIR164
 rank     E-value  score  bias mdl mdl from   mdl to       seq from      seq to       acc trunc   gc
 ----   --------- ------ ----- --- -------- --------    ----------- -----------      ---- ----- ----
  (1) ?     0.034   14.1   0.0  cm       81      101 ~~           1          21 + ~~ 1.00 5'&3' 0.52
                                ?????????  ???????? ?      NC
                          ~~~~~~>>>>>>>>>-->>>>>>>>->~~~~~ CS
               MIR164   1 <[80]*CAcGUGCcCuuCUUCuCCAuC*[8]> 109
                                CACGUG  CU+CUUCUCCA+C
          sbc-miR164b   1 <[ 0]*CACGUGUUCUCCUUCUCCAAC*[0]> 21
                          ......*********************..... PP

Targets

Predicted by TargetFinder

NM_001077268 ;   NM_001255982 ;   NM_001255983 ;   NM_001255984 ;   NM_001255985 ;   NM_001255986 ;   NM_001255987 ;   NM_001255988 ;   NM_001255989 ;   NM_001258421 ;   NM_001318475 ;   NM_001319053 ;   NM_001345981 ;   NM_001345982 ;   NM_001345983 ;   NM_001345984 ;   NM_001470 ;   NM_002096 ;   NM_018316 ;   NM_021903 ;   NM_021904 ;   NM_024027 ;   NM_032850 ;   NM_139056 ;   NM_199235 ;   NR_045659 ;   NR_136935 ;  

Predicted by TAPIR

NM_001319053 ;   NM_001353652 ;   NM_001470 ;   NM_021903 ;   NM_021904 ;   NR_148483 ;